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[package.extras] @@ -3169,4 +3167,4 @@ test = ["zope.testing"] [metadata] lock-version = "2.0" python-versions = ">=3.8.1,<3.10" -content-hash = "e9ce5f87370edc1b363189bfedbe20d776d6ca8855ce148f181af20382a85c95" +content-hash = "3c27e851cbbdfcd282719d95bcec29b75933c82e417acf78655fbf80a22d2ea0" diff --git a/pyproject.toml b/pyproject.toml index 0211318d0..834c4956f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "dcicsnovault" -version = "10.0.0" +version = "10.1.0.1b1" description = "Storage support for 4DN Data Portals." authors = ["4DN-DCIC Team "] license = "MIT" @@ -41,8 +41,7 @@ botocore = ">=1.26.133" # no particular version required, but this speeds up se boto3 = ">=1.26.133" # no particular version required, but this speeds up search elasticsearch = "7.13.4" # versions >= 7.14.0 lock out AWS ES elasticsearch_dsl = "^7.4.0" -#dcicutils = "7.4.4.5b21" -dcicutils = "^7.5.0" +dcicutils = "7.7.0.1b1" future = ">=0.15.2,<1" html5lib = ">=1.1" # experimental, should be OK now that we're not using moto server humanfriendly = "^1.44.9" diff --git a/snovault/item_models.py b/snovault/item_models.py new file mode 100644 index 000000000..54e0ccc2e --- /dev/null +++ b/snovault/item_models.py @@ -0,0 +1,79 @@ +from __future__ import annotations + +from dataclasses import dataclass, field +from typing import Any, Dict, Optional, Union + +import structlog +from pyramid.request import Request + +from dcicutils.item_model_utils import PortalItem as PortalItemWithoutRequests + + +logger = structlog.getLogger(__name__) + + +@dataclass(frozen=True) +class PortalItem(PortalItemWithoutRequests): + request: Optional[Request] = field(default=None, hash=False) + + def get_request(self) -> Union[Request, None]: + return self.request + + @classmethod + def from_properties( + cls, + properties: Dict[str, Any], + fetch_links=False, + auth=None, + request=None, + **kwargs: Any, + ) -> PortalItem: + return cls(properties, fetch_links=fetch_links, auth=auth, request=request) + + @classmethod + def from_identifier_and_existing_item( + cls, identifier: str, existing_item: PortalItem, **kwargs: Any + ) -> PortalItem: + fetch_links = existing_item.should_fetch_links() + auth = existing_item.get_auth() + request = existing_item.get_request() + if auth: + return cls.from_identifier_and_auth( + identifier, auth, fetch_links=fetch_links, **kwargs + ) + if request: + return cls.from_identifier_and_request( + identifier, request, fetch_links=fetch_links, **kwargs + ) + raise RuntimeError( + "Unable to fetch given identifier without auth key or request" + ) + + @classmethod + def from_properties_and_existing_item( + cls, properties: Dict[str, Any], existing_item: PortalItem, **kwargs: Any + ) -> PortalItem: + fetch_links = existing_item.should_fetch_links() + auth = existing_item.get_auth() + request = existing_item.get_request() + return cls.from_properties( + properties, fetch_links=fetch_links, auth=auth, request=request, **kwargs + ) + + @classmethod + def from_identifier_and_request( + cls, identifier: str, request: Request, fetch_links: bool, **kwargs: Any + ) -> PortalItem: + properties = cls._get_item_via_request(identifier, request) + return cls.from_properties( + properties, request=request, fetch_links=fetch_links, **kwargs + ) + + @classmethod + def _get_item_via_request(cls, identifier: str, request: Request) -> Dict[str, Any]: + try: + result = request.embed(identifier, "@@object") + except Exception as e: + logger.exception(f"Unable to fetch identifer {identifier}: {e}") + result = {} + return result diff --git a/snovault/tests/test_item_models.py b/snovault/tests/test_item_models.py new file mode 100644 index 000000000..35157545e --- /dev/null +++ b/snovault/tests/test_item_models.py @@ -0,0 +1,107 @@ +from contextlib import contextmanager +from typing import Any, Dict, Iterator, Optional, Union +from unittest import mock + +import pytest +from dcicutils.testing_utils import patch_context +from pyramid.request import Request + +from .. import item_models as item_models_module +from ..item_models import PortalItem + + +SOME_UUID = "uuid1234" +SOME_ITEM_PROPERTIES = { + "uuid": SOME_UUID, +} +SOME_AUTH = {"key": "some_key", "secret": "some_secret"} + + +@contextmanager +def patch_from_identifier_and_auth(**kwargs) -> Iterator[mock.MagicMock]: + with patch_context( + item_models_module.PortalItem.from_identifier_and_auth, **kwargs + ) as mock_item: + yield mock_item + + +@contextmanager +def patch_from_identifier_and_request(**kwargs) -> Iterator[mock.MagicMock]: + with patch_context( + item_models_module.PortalItem.from_identifier_and_request, **kwargs + ) as mock_item: + yield mock_item + + +def mock_request(embed_exception: bool = False) -> mock.MagicMock: + result = mock.create_autospec(Request, instance=True) + embed_method = mock.MagicMock() + if embed_exception: + embed_method.side_effect = Exception + result.embed = embed_method + return result + + +def get_portal_item( + auth: Optional[Dict[str, Any]] = SOME_AUTH, + fetch_links: bool = False, + request: Optional[Request] = None, +) -> PortalItem: + return PortalItem({}, auth=auth, fetch_links=fetch_links, request=request) + + +class TestPortalItem: + @pytest.mark.parametrize( + "auth,request_param,exception_expected", + [ + (None, None, True), + (SOME_AUTH, None, False), + (None, mock_request(), False), + (SOME_AUTH, mock_request(), False), + ], + ) + def test_from_identifier_and_existing_item( + self, + auth: Union[Dict[str, Any], None], + request_param: Union[Request, None], + exception_expected: bool, + ) -> None: + identifier = SOME_UUID + fetch_links = True + portal_item = get_portal_item( + fetch_links=fetch_links, auth=auth, request=request_param + ) + with patch_from_identifier_and_auth() as mock_from_identifier_and_auth: + with patch_from_identifier_and_request() as mock_from_identifier_and_request: + if exception_expected: + with pytest.raises(RuntimeError): + PortalItem.from_identifier_and_existing_item( + identifier, portal_item + ) + else: + result = PortalItem.from_identifier_and_existing_item( + identifier, portal_item + ) + if auth: + assert result == mock_from_identifier_and_auth.return_value + mock_from_identifier_and_auth.assert_called_once_with( + identifier, auth, fetch_links=fetch_links + ) + mock_from_identifier_and_request.assert_not_called() + elif request_param: + assert result == mock_from_identifier_and_request.return_value + mock_from_identifier_and_request.assert_called_once_with( + identifier, request_param, fetch_links=fetch_links + ) + mock_from_identifier_and_auth.assert_not_called() + + @pytest.mark.parametrize("exception_expected", [True, False]) + def test_get_item_via_request(self, exception_expected: bool) -> None: + identifier = SOME_UUID + request = mock_request(embed_exception=exception_expected) + result = PortalItem._get_item_via_request(identifier, request) + request.embed.assert_called_once_with(identifier, "@@object") + if exception_expected: + assert result == {} + else: + assert result == request.embed.return_value