diff --git a/src/blr/multiqc_config.yaml b/src/blr/multiqc_config.yaml index 32e78c57..4070521b 100644 --- a/src/blr/multiqc_config.yaml +++ b/src/blr/multiqc_config.yaml @@ -107,16 +107,16 @@ sp: cutadapt: fn: "trimmed.fastq.log" whatshap/stats: - fn: "final.whatshap_stats.tsv" + fn: "*.whatshap_stats.tsv" whatshap/haplotag: fn: "*.haplotag.log" fastqc: fn_re: "trimmed.barcoded.[1|2].fastq.gz" hapcut2/phasing_stats: - fn: "final.phasing_stats.txt" + fn: "*.phasing_stats.txt" stats/sv_sizes: - fn: "final.sv_sizes.tsv" + fn: "*.sv_sizes.tsv" stats/molecule_stats: - fn: "final.molecule_stats.txt" + fn: "*.molecule_stats.txt" stats/barcode_stats: - fn: "final.barcode_stats.txt" + fn: "*.barcode_stats.txt" diff --git a/tests/test_multiqc_blr.py b/tests/test_multiqc_blr.py index e149ae77..622a84ce 100644 --- a/tests/test_multiqc_blr.py +++ b/tests/test_multiqc_blr.py @@ -95,7 +95,7 @@ def test_stats_barcode_stats(tmpdir): def test_hapcut2(tmpdir): - copyfile(TESTDATA_HAPCUT2_PHASING_STATS, tmpdir / "example.txt") + copyfile(TESTDATA_HAPCUT2_PHASING_STATS, tmpdir / "example.phasing_stats.txt") subprocess.run(["multiqc", "-f", tmpdir, "-o", tmpdir, "-m", "hapcut2"]) @@ -107,7 +107,7 @@ def test_hapcut2(tmpdir): def test_hapcut2_with_auN(tmpdir): - copyfile(TESTDATA_HAPCUT2_PHASING_STATS_AUN, tmpdir / "example.txt") + copyfile(TESTDATA_HAPCUT2_PHASING_STATS_AUN, tmpdir / "example.phasing_stats.txt") subprocess.run(["multiqc", "-f", tmpdir, "-o", tmpdir, "-m", "hapcut2"]) @@ -119,7 +119,7 @@ def test_hapcut2_with_auN(tmpdir): def test_hapcut2_chroms(tmpdir): - copyfile(TESTDATA_HAPCUT2_PHASING_STATS_CHROM, tmpdir / "example.txt") + copyfile(TESTDATA_HAPCUT2_PHASING_STATS_CHROM, tmpdir / "example.phasing_stats.txt") subprocess.run(["multiqc", "-f", tmpdir, "-o", tmpdir, "-m", "hapcut2"])