You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
LinkFragments in the Hapcut2 package is a python script that connects heterozygous variants based on barcode (BX) information. The way it currently does this is by connecting reads with the same BX tag that are within a certain window. This effectively re-calls the molecules we defined in buildmolecules which is quite unnecessary.
Merged PR in HapCUT2 vibansal/HapCUT2#114 to add this functionality. Once the next HapCUT2 version is released we can update the hapcut2_linkfragments rule to use MI tags.
LinkFragments in the Hapcut2 package is a python script that connects heterozygous variants based on barcode (BX) information. The way it currently does this is by connecting reads with the same BX tag that are within a certain window. This effectively re-calls the molecules we defined in
buildmolecules
which is quite unnecessary.Merged PR in HapCUT2 vibansal/HapCUT2#114 to add this functionality. Once the next HapCUT2 version is released we can update the
hapcut2_linkfragments
rule to use MI tags.Issue copied from FrickTobias/BLR#212
The text was updated successfully, but these errors were encountered: