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res_cll077_deep.txt
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Elapsed time: 272678 sec
Input name: cll077_deep
Number of samples: 5
Number of mutations: 16
Clone limit: 1
Total clone used: 16
Model (k): persistent (2)
Total error: 0.186797307017
Solution accuracy: 0.0156867138178
Clonal matrix:
0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
0 1 0 0 0 0 0 0 0 1 0 0 0 0 1 0
0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0
1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 0
0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0
1 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1
0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0
0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0
0 0 1 0 0 0 0 0 0 0 0 0 1 1 1 0
0 0 1 1 1 0 0 0 0 0 0 0 1 1 1 0
0 0 1 1 0 0 0 0 0 0 0 0 1 1 1 0
1 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0
0 1 0 0 0 0 0 0 0 1 0 1 0 0 1 0
1 0 0 0 0 1 0 0 1 0 1 0 0 0 1 1
Usage matrix:
0.0 0.00157983993901 0.00728322470584 0.0 0.0 0.0243976656622 0.268057161697 0.00357015622276 0.0452908335695 0.0 0.00111298605222 0.351397900551 0.0040699573424 0.0267072368458 0.00225698324022 0.166089861266
0.0 0.00121869573627 0.0184499305265 0.0 0.0 0.0 0.22352270406 0.0134271370398 0.0134516200797 0.00369485840111 0.0 0.384931518339 0.00880845178561 0.0190723310921 0.0120962612607 0.260113252664
0.0268944223023 0.00506734833623 0.00914355783085 0.0289856204349 0.000112785660337 0.0128746803907 0.224176527332 0.0202697903281 0.0 0.0 0.010099822851 0.389484994628 0.0 0.00567409233882 0.0175470332851 0.249669324282
0.0 0.0133230788998 0.0144658470378 0.01525768171 0.0 0.0160225944797 0.270410616303 0.0638073205149 0.0272326534361 0.00375300723274 0.0 0.320845380983 0.0 0.0 0.060762557127 0.194119262276
0.0103031701168 0.0219286003899 0.00590925717228 0.257114894576 0.00451203953898 0.00157669090575 0.0 0.150034866224 0.0 0.0 0.00216879981324 0.111281625689 0.0 0.0217300441909 0.136665754175 0.0476374653516
Extended matrix:
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 0 0 0
1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0
1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0
0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0
0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0
0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0
0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 1 0 0 0
1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0
0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0
1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0
Error matrix:
0.0 0.00127901393251 0.023293136781 0.0 0.0 0.0 0.0 0.00143062953482 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.025037971965
0.0 0.0 0.0107762300228 0.0 0.0 0.00506968114189 0.0 0.00150285445091 0.0 0.0030691183814 0.00362120633287 0.0 0.0 0.0 0.0 0.0
0.0 0.00175722223494 0.0 0.0 0.0172185004092 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0137084417566 0.0 0.00764205548007 0.0
1.34046652169e-05 0.000449175783926 0.0 0.00171651791673 0.00626361394497 0.0 0.0 0.00419482622307 0.0 0.0 0.0 0.0 0.0 0.0 0.00461038759953 0.0
0.0 0.0168514190501 0.0 0.0 0.016635572883 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.00887505569572 0.0 0.0 0.0117812708193
Inferred matrix F:
0.460854259809 0.00383682317923 0.356580843946 0.355467857893 0.351397900551 0.434147022963 0.00357015622276 0.00357015622276 0.166089861266 0.00383682317923 0.485251925471 0.00225698324022 0.356580843946 0.363864068651 0.898243650871 0.434147022963
0.502708287816 0.013314956997 0.393739970125 0.393739970125 0.384931518339 0.483635956724 0.0134271370398 0.0134271370398 0.260113252664 0.013314956997 0.502708287816 0.0120962612607 0.397434828526 0.412189900651 0.945359623945 0.483635956724
0.508505564388 0.0226143816213 0.399584817479 0.389484994628 0.389484994628 0.502831472049 0.0203825759884 0.0202697903281 0.249669324282 0.0226143816213 0.521380244778 0.0175470332851 0.399584817479 0.40872837531 0.979617424012 0.473845851614
0.479787560289 0.0740856360268 0.320845380983 0.320845380983 0.320845380983 0.479787560289 0.0638073205149 0.0638073205149 0.194119262276 0.0740856360268 0.495810154769 0.060762557127 0.324598388216 0.335311228021 0.936192679485 0.464529878579
0.326482404119 0.158594354565 0.113450425502 0.111281625689 0.111281625689 0.304752359928 0.154546905763 0.150034866224 0.0476374653516 0.158594354565 0.328059095024 0.136665754175 0.113450425502 0.119359682675 0.61631630238 0.0476374653516
Tree in DOT code:
graph phylogeny {
"germline" -- "SAMHD1";
"SAMHD1" -- "EXOC6B";
"EXOC6B" -- "NAMPTL";
"NAMPTL" -- "EXOC6B-";
"EXOC6B-" -- "BCL2L13";
"BCL2L13" -- "GPR158";
"GPR158" -- "OCA2";
"GPR158" -- "COL24A1";
"COL24A1" -- "HMCN1";
"EXOC6B-" -- "NOD1";
"NAMPTL" -- "SLC12A1";
"SLC12A1" -- "PLA2G16";
"PLA2G16" -- "DAZAP1";
"DAZAP1" -- "NAMPTL-";
"NAMPTL-" -- "LRRC16A";
"LRRC16A" -- "GHDC";
"SAMHD1" -- "MAP2K1";
"MAP2K1" -- "KLHDC2";
}