incorrect values for imaging_depth
column in VisualBehaviorOphysProjectCache ophys_experiment_table
#2745
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imaging_depth
column in VisualBehaviorOphysProjectCache ophys_experiment_table
#2745
There are two columns related to the imaging depth for 2-photon imaging experiments, one is
targeted_imaging_depth
which should be the intended depth for the experiment, and the other isimaging_depth
which is the actual depth recorded by the 2-photon microscope after zeroing on the cortical surface (which can be slightly variable day to day) and moving to the intended field of view based on the best match to previous recording days with the same field of view.The
targeted_imaging_depth
should be the same for all sessions recorded from the same field of view (indicated by itsophys_container_id
). Theimaging_depth
will inevitably differ slightly from day to day.In the current version of AllenSDK (2.16.2) and visual behavior ophys dataset (v1.1.0), the values for these two columns are identical, which is clearly a mistake.
Given that the values are always intervals of 5, i believe that both values represent the
targeted_imaging_depth
(i.e. theimaging_depth
column is incorrect).I am not sure where this error was introduced, but it should either be fixed (the preferred option), or the documentation in the code (and all other relevant locations) should be updated to reflect the fact that these columns are the same and both represent the intended target depth, not the actual measured value.
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