v0.4.5

What's Changed

• key changes and improvements in #75, #76, #77, #78

Full Changelog: v0.4.1...v0.4.5

v0.4.1

What's Changed

• refactor modules and add new analysis features in #74
  • add PyDESeq2 as a method for phenotype calculation
  • update docs text and format
  • introduce visualize module, related to #63
  • change phenoscore fold-change log transformation default behavior

Full Changelog: v0.4.0...v0.4.1

v0.4.0

What's Changed

• first release of CLI with guidecounter subcommand in #69

Full Changelog: v0.3.5...v0.4.0

v0.3.5

What's Changed

• fix env file for docs #66
• fix bugs and improve code in #67

Full Changelog: v0.3.4...v0.3.5

v0.3.4

What's Changed

• update plotting code formats in #65

Full Changelog: v0.3.3...v0.3.4

v0.3.3

What's Changed

PR #64

• improve options for low count filters
• add data dashboard module

Full Changelog: v0.3.2...v0.3.3

v0.3.2

What's Changed

• major code changes and logical improvements in analysis steps in #61

Full Changelog: v0.3.1...v0.3.2

v0.3.1

What's Changed

• add trim_first_g option for fastq2count task
  • for more info about this logic, see Fig 2 here
• minor code and document improvements in #59

Full Changelog: v0.3.0...v0.3.1

v0.3.0

What's Changed

• improve docs and add example codes for fastq2count tasks
• bug fixes and code improvements in #58

Full Changelog: v0.2.13...v0.3.0

v0.2.13

What's Changed

• minor improvements
  • change code organization in #57
  • close #14
  • add methods to collect score tables

Full Changelog: v0.2.12...v0.2.13