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metadata.yaml
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---
title: "Ten Quick Tips for Deep Learning in Biology"
keywords:
- quick tips
- machine learning
- deep learning
- artificial intelligence
lang: en-US
thumbnail: content/images/thumbnail_tips_overview.png
authors:
-
github: Benjamin-Lee
name: Benjamin D. Lee
initials: BDL
orcid: 0000-0002-7133-8397
email: [email protected]
affiliations:
- In-Q-Tel Labs
- School of Engineering and Applied Sciences, Harvard University
- Department of Genetics, Harvard Medical School
conflicts: None
approval: yes
accountable: yes
postcode: "02138"
-
github: agitter
name: Anthony Gitter
initials: AG
orcid: 0000-0002-5324-9833
twitter: anthonygitter
email: [email protected]
affiliations:
- Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, USA
- Morgridge Institute for Research, Madison, Wisconsin, USA
conflicts: Filed a patent application with the Wisconsin Alumni Research Foundation related to classifying activated T cells.
funders:
- National Science Foundation (DBI 1553206)
- National Institutes of Health (R01GM135631)
postcode: "53715"
approval: yes
accountable: yes
-
github: cgreene
name: Casey S. Greene
initials: CSG
orcid: 0000-0001-8713-9213
email: [email protected]
affiliations:
- Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA
- Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, CO, USA
- Center for Health AI, University of Colorado School of Medicine, Aurora, CO, USA
conflicts: None
funders:
- National Institutes of Health (R01 HG010067)
- the Gordon and Betty Moore Foundation (GBMF 4552)
postcode: "80045"
approval: yes
accountable: yes
-
github: rasbt
name: Sebastian Raschka
twitter: rasbt
initials: SR
orcid: 0000-0001-6989-4493
email: [email protected]
funders:
- Wisconsin Alumni Foundation (AAD5912)
conflicts: None
affiliations:
- Department of Statistics, University of Wisconsin-Madison
postcode: "53706"
approval: yes
accountable: yes
-
github: fmaguire
name: Finlay Maguire
initials: FM
orcid: 0000-0002-1203-9514
email: [email protected]
conflicts: None
funders:
- Donald Hill Family Fellowship
affiliations:
- Faculty of Computer Science, Dalhousie University
postcode: "B3H 4R2"
approval: yes
accountable: yes
-
github: AlexanderTitus
name: Alexander J. Titus
initials: AJT
orcid: 0000-0002-0145-9564
email: [email protected]
affiliations:
- University of New Hampshire
- Bioeconomy.XYZ
conflicts: None
approval: yes
accountable: yes
postcode: "03101"
twitter: 1alexandertitus
-
github: mdkessler
name: Michael D. Kessler
initials: MDK
orcid: 0000-0003-1258-5221
email: [email protected]
affiliations:
- Department of Oncology, Johns Hopkins University
- Institute for Genome Sciences, University of Maryland School of Medicine
conflicts: None
funders:
- National Institutes of Health (R01DE027809)
postcode: "21205"
approval: yes
accountable: yes
-
github: ajlee21
name: Alexandra J. Lee
initials: AJL
orcid: 0000-0002-0208-3730
email: [email protected]
affiliations:
- Genomics and Computational Biology Graduate Program, University of Pennsylvania
- Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania
funders:
- the Gordon and Betty Moore Foundation (GBMF 4552)
conflicts: None
postcode: "19104"
approval: yes
accountable: yes
-
github: chevrm
name: Marc G. Chevrette
initials: MGC
orcid: 0000-0002-7209-0717
twitter: wildtypeMC
email: [email protected]
affiliations:
- Wisconsin Institute for Discovery and Department of Plant Pathology, University of Wisconsin-Madison
funders:
- Grant 2020-67012-31772 (accession 1022881) from the USDA National Institute of Food and Agriculture
conflicts: None
postcode: "53711"
approval: yes
accountable: yes
-
github: pstew
name: Paul Allen Stewart
twitter: biodataguy
initials: PAS
orcid: 0000-0003-0882-308X
email: [email protected]
affiliations:
- Department of Biostatistics and Bioinformatics, Moffitt Cancer Center, Tampa FL
conflicts: None
approval: yes
accountable: yes
postcode: "33647"
funders:
- Moffitt Cancer Center Support Grant (P30-CA076292)
-
github: tbrittoborges
name: Thiago Britto-Borges
initials: TBB
orcid: 0000-0002-6218-4429
email: [email protected]
affiliations:
- Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, University Hospital Heidelberg
- Department of Internal Medicine III (Cardiology, Angiology, and Pneumology), University Hospital Heidelberg
postcode: "69120"
conflicts: None
approval: yes
accountable: yes
-
github: evancofer
name: Evan M. Cofer
twitter: evan_cofer
initials: EMC
orcid: 0000-0003-3877-0433
email: [email protected]
affiliations:
- Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA
- Graduate Program in Quantitative and Computational Biology, Princeton University, Princeton, NJ, USA
conflicts: None
postcode: "08544"
approval: yes
accountable: yes
funders:
- National Institutes of Health (T32 HG003284)
- National Science Foundation Graduate Research Fellowship Program
-
github: khyu
name: Kun-Hsing Yu
initials: KHY
orcid: 0000-0001-9892-8218
email: [email protected]
affiliations:
- Department of Biomedical Informatics, Harvard Medical School
- "Department of Pathology, Brigham and Women's Hospital"
conflicts: Inventor of a quantitative pathology analytical system (U.S. Patent 10,832,406).
approval: yes
accountable: yes
postcode: "02115"
funders:
- Blavatnik Center for Computational Biomedicine Award
- National Institute of General Medical Sciences (R35GM142879)
-
github: juancarmona
name: Juan Jose Carmona
initials: JJC
orcid: 0000-0002-3029-4658
twitter: jcveritas
email: [email protected]
affiliations:
- Philips Healthcare, Cambridge, MA, USA
- Philips Research North America, Cambridge, MA, USA
postcode: "02143"
conflicts: None
approval: yes
accountable: yes
-
github: ejfertig
name: Elana J. Fertig
initials: EJF
orcid: 0000-0003-3204-342X
email: [email protected]
affiliations:
- Department of Oncology, Department of Biomedical Engineering, Department of Applied Mathematics and Statistics, Convergence Institute, Johns Hopkins University
conflicts: Scientific Advisory Board member at Viosera Therapeutics.
funders:
- Lustgarten Foundation
- Allegheny Health Network
- Emerson Foundation (640183)
- National Cancer Institute (U01CA212007, U01CA253403, P30CA006973)
- National Institute of Dental and Cranofacial Research (R01DE027809)
postcode: "21205"
approval: yes
accountable: yes
-
github: alxndrkalinin
name: Alexandr A. Kalinin
initials: AAK
orcid: 0000-0003-4563-3226
twitter: alxndrkalinin
email: [email protected]
affiliations:
- Medical Big Data Group, Shenzhen Research Institute of Big Data, China
- Department of Computational Medicine and Bioinformatics, University of Michigan, USA
conflicts: Co-inventor on 4 patent applications related to machine learning applications in biology.
postcode: "518172"
approval: yes
accountable: yes
-
github: betsig
name: Brandon Signal
initials: BS
orcid: 0000-0002-6839-2392
email: [email protected]
affiliations:
- School of Medicine, College of Health and Medicine, University of Tasmania
postcode: "7001"
approval: yes
accountable: yes
conflicts: None
-
github: blengerich
name: Benjamin J. Lengerich
initials: BJL
orcid: 0000-0001-8690-9554
email: [email protected]
affiliations:
- Computer Science Department, Carnegie Mellon University
conflicts: None
approval: yes
accountable: yes
postcode: "15213"
-
github: ttriche
name: Timothy J. Triche, Jr.
initials: TJT
orcid: 0000-0001-5665-946X
email: [email protected]
affiliations:
- Center for Epigenetics, Van Andel Research Institute
- Department of Pediatrics, College of Human Medicine, Michigan State University
- Department of Translational Genomics, Keck School of Medicine, University of Southern California
conflicts: None
funders:
- National Institute of Allergy and Infectious Diseases (R21AI153997)
- Michelle Lunn Hope Foundation
- Folz Fund for Cancer Research
- Grand Rapids Community Foundation
approval: yes
accountable: yes
postcode: "49503"
-
github: SiminaB
name: Simina M. Boca
initials: SMB
orcid: 0000-0002-1400-3398
email: [email protected]
affiliations:
- Innovation Center for Biomedical Informatics, Georgetown University Medical Center
- Department of Oncology, Georgetown University Medical Center
- Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown University Medical Center
- Cancer Prevention and Control Program, Lombardi Comprehensive Cancer Center
postcode: "20007"
approval: yes
accountable: yes
conflicts: Currently an employee and minor share holder at AstraZeneca, Gaithersburg, MD, USA.
funders:
- National Institutes of Health (R21 CA220398)