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Nextflow Process: Extract IGRs and CDS #29

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kenibrewer opened this issue Aug 11, 2023 · 0 comments

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kenibrewer commented Aug 11, 2023 •

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Build a Nextflow process with the following inputs:

A genome fasta file
A genome annotation file (GFF or GTF)

Parameters:

Overlap
Minimum length

Output:

A fasta consisting of just the IGRs
A fasta consisting of just protein-coding regions
An IGR feature file consisting of GC content, length, other features calculated for each IGR

kenibrewer changed the title ~~Nextflow Process: Extract IGR~~ Nextflow Process: Extract IGRs and CDS

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