Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Nextflow Process: Download requested genome(s) from NCBI #30

Open
kenibrewer opened this issue Aug 12, 2023 · 0 comments
Open

Nextflow Process: Download requested genome(s) from NCBI #30

kenibrewer opened this issue Aug 12, 2023 · 0 comments
Assignees
@kenibrewer

Comments

@kenibrewer
Copy link
Contributor

Both the database build workflow and the genome analysis workflow require functions for downloading genome fasta and annotation files from NCBI. We can accomplish this using the nf-core module ncbigenomedownload with the command line arguments found here
@kenibrewer kenibrewer self-assigned this Aug 12, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@kenibrewer kenibrewer

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

When branches are created from issues, their pull requests are automatically linked.

feature/issue-30/download-genome BreakerLab/dimpl
1 participant
@kenibrewer