unpack.pbs

#!/bin/bash
#PBS -q AM

# usage : qsub -l select=1:ncpus=8:mem=8gb -v RUN_NUMBER=<run number> unpack
# e.g.  : qsub -l select=1:ncpus=8:mem=8gb -v RUN_NUMBER=2071 unpack
# rootfiles are placed in output directory below

#RUN_NUMBER=$1
 
source $HOME/apps/dot_cagragrc

cd $ANADIR
echo "current directorty " $(pwd)
echo "Analysis directory " $ANADIR

anadir=$ANADIR

hists="e441"
histlib=$anadir/lib/lib$hists.so
histsrc=$anadir/histos/$hists.cxx
calibrations=$anadir/config/$CAL_FILE
histdef=$anadir/hist.def
constants=$anadir/config/$VAL_FILE
grutinizer=$anadir/bin/grutinizer

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# data directories
grdata=$anadir/data/gr/E441/




outputdir=$anadir/data/rootfiles/E441/

run_number=$(echo "$RUN_NUMBER" | sed -r 's/.*_([0-9]*)\..*/\1/g')
outputdir+="Run$run_number/"
mkdir -p $outputdir

 


x=$(ls $anadir/data/cagra/E441/run_${run_number}.gtd* 2> /dev/null)

if [ "$x" == "" ]; then
    cagradata=""
else
    cagradata="\"$anadir/data/cagra/E441/run_${run_number}.gtd*\""
fi





cp $calibrations $constants $histdef $histsrc $outputdir
cmd="$grutinizer -Hmq $histlib $calibrations $constants ${cagradata} ${grdata}run${run_number}.bld -o ${outputdir}run${run_number}.root --hist-output ./hist${run_number}.root"

echo $cmd
echo $cmd > $outputdir"grut.cmd"

$cmd