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  • diff --git a/2024/12/01/mesh3-improvements/index.html b/2024/12/01/mesh3-improvements/index.html new file mode 100644 index 000000000..6bf03124f --- /dev/null +++ b/2024/12/01/mesh3-improvements/index.html @@ -0,0 +1,360 @@ + + + + + + + + + + + Mesh_3 improvements + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    +
    +
    +
    +

    Mesh_3 improvements

    + + CGAL/cgal + +
    +
    +
    +
    + + + +
    +
    +
    + +
    +
    +
    +

    Mesh_3 improvements

    +
    +
    + +
    + +

    Jane Tournois

    +

    GeometryFactory

    + +


    +

    Introduced in CGAL 3.5, the package +3D Mesh Generation +is designed to generate a isotropic simplicial meshes discretizing 3D domains. +Since then, multiple improvements in mesh quality, performances, and versatility have been made available in CGAL. +Lately, CGAL authors have focused more on the quality of the output mesh, the ability of the +mesh generation algorithm to represent the input surface in a more accurate way, for a wider range of input data types. +

    + +


    +

    Recent releases of CGAL have introduced improvements to the 3D Tetrahedral Mesh Generation package: +detection and protection of triple lines from labeled images, +generation and use of weighted labeled images, +and a new approximation error criterion for polyline features.

    + +


    +

    Triple lines from labeled images

    + +

    CGAL's tetrahedral mesh generation algorithm is able to compute tetrahedral meshes from 3D segmented images. +For all types of inputs, detection and construction of one-dimensional features must be done a priori for the +feature protection algorithm to be able to represent them properly in the generated mesh. +In 3D segmented images, such features correspond to the intersections of the bounding box of the image with the surfaces +defined by the image, as well as polylines that lie at the intersection of three or more subdomains (including the outside).

    + +

    The article +Hege, H. C., Seebass, M., Stalling, D., & Zöckler, M. (1997), +A generalized marching cubes algorithm based on non-binary classifications, provides a list of possible voxel configurations. +This description has been generalized for tetrahedral mesh generation needs, and +implemented in CGAL.

    + +

    After feature lines detection, similarly to what is done for polyhedral surfaces, the polyline features +are added to the feature graph of the domain for feature protection.

    + +

    Two detection functors are provided : +

      +
    • CGAL::Detect_features_in_image() detects and constructs all + polylines lying at the intersection of three or more subdomains, and
    • +
    • CGAL::Detect_features_on_image_bbox() detects and constructs the polylines + that lie at the intersection of two or more subdomains and the bounding box of the input labeled image.
    • +
    +

    + +
    +
    +
    Mesh generation from labeled image without (left) + and with triple lines detection and protection (right). + The polylines lying at the intersection of three or more subdomains are + a lot more precise with a lot fewer vertices. +
    + +


    +

    Weighted Labeled Images

    + +

    When a segmented image is given as input for tetrahedral mesh generation, +the generated mesh surface sometimes sticks too closely to the voxels surface, causing an aliasing effect. A solution to generate +a smooth and accurate output surface was described by Stalling et al in +Stalling, D., Zöckler, M., Sander, O., & Hege, H. C. (1998), +Weighted labels for 3D image segmentation. +It consists in generating a second input image, made of integer coefficients called weights, and use those weights to define +smoother domain boundaries. The 3D image of weights can be generated by CGAL::Mesh_3::generate_label_weights().

    + +
    +
    +
    Mesh generation from labeled image without weights (left, 88,000 vertices) + and with weights (right, 67,000 vertices). +
    + +


    +

    The following example shows how to use weighted labeled images: mesh_3D_weighted_image.cpp.

    + +

    Utilizing tetrahedral mesh generation from labeled images, incorporating both feature detection and weighted labels, +presents challenges. A new method that combines feature detection and weighted labels has been +designed and implemented in CGAL, achieving smooth and feature preserving output meshes. +This method leverages the best of these two new functionalities.

    + +


    +

    Approximation Criterion on Feature Edges

    + +

    A Delaunay refinement algorithm is guided by meshing criteria that trigger Steiner vertices insertions, +until they are satisfied. +The list of CGAL meshing criteria has been enriched with a new criterion that enables the user to +define an upper bound on the distance between the input feature graph and the output feature edges.

    + +

    The following example shows how to use this new criterion, called edge_distance: + +mesh_polyhedral_domain_with_edge_distance.cpp.

    + +
    +
    +
    Mesh generation from polyhedral surface with varying edge_distance meshing criterion. + The quality improvement is important on the lower end of stool feet. +
    + +

    Status

    + +

    All these new improvements have been integrated in CGAL-6.0.1, which has just been officially released.

    + +

    +CGAL-6.0.1 announcement +
    + +Documentation of the package Mesh_3 +
    + +CGAL master branch on GitHub

    + +
    +
    +
    + +
    +

    Recent Posts

    + + Older posts... +
    +
    +
    +
    + + + + + + + + + + + + + + + + diff --git a/April20/index.html b/April20/index.html index e27585d59..739408405 100644 --- a/April20/index.html +++ b/April20/index.html @@ -208,6 +208,27 @@

    Latest News

    + + + + + + +
  • December 2024 + Mesh_3 improvements -- Mesh_3 improvements in CGAL-6.0 +
  • + + + + + + + + + + + @@ -304,49 +325,6 @@

    Latest News

    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
  • May 2024 - New in CGAL: Kinetic Space Partition and Kinetic Surface Reconstruction -
  • - - Older news and announcements... @@ -366,6 +344,11 @@

    Latest Releases

    + + + + +
  • Latest stable release: CGAL 6.0.1
  • @@ -876,6 +859,8 @@

    Latest Releases

    + + @@ -900,6 +885,14 @@

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    + + + + + + + + diff --git a/April2015.html b/April2015.html index 90c15c941..336d63ffb 100644 --- a/April2015.html +++ b/April2015.html @@ -183,7 +183,7 @@

    Latest News

    -
  • October 2024 New CGAL versions: 5.5.5, 5.6.2, 6.0, and 6.0.1:
  • +
  • December 2024 Mesh_3 improvements: Mesh_3 improvements in CGAL-6.0
  • @@ -191,7 +191,7 @@

    Latest News

    -
  • October 2024 CGAL 6.0.1 released: CGAL 6.0.1
  • +
  • October 2024 New CGAL versions: 5.5.5, 5.6.2, 6.0, and 6.0.1:
  • @@ -199,7 +199,7 @@

    Latest News

    -
  • October 2024 CGAL 5.6.2 released: CGAL 5.6.2
  • +
  • October 2024 CGAL 6.0.1 released: CGAL 6.0.1
  • @@ -207,7 +207,7 @@

    Latest News

    -
  • October 2024 CGAL 5.5.5 released: CGAL 5.5.5
  • +
  • October 2024 CGAL 5.6.2 released: CGAL 5.6.2
  • diff --git a/April2019.html b/April2019.html index 3e523f49b..199fcfb28 100644 --- a/April2019.html +++ b/April2019.html @@ -208,6 +208,27 @@

    Latest News

    + + + + + + +
  • December 2024 + Mesh_3 improvements -- Mesh_3 improvements in CGAL-6.0 +
  • + + + + + + + + + + + @@ -304,49 +325,6 @@

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    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
  • May 2024 - New in CGAL: Kinetic Space Partition and Kinetic Surface Reconstruction -
  • - - Older news and announcements... @@ -366,6 +344,11 @@

    Latest Releases

    + + + + +
  • Latest stable release: CGAL 6.0.1
  • @@ -876,6 +859,8 @@

    Latest Releases

    + + @@ -900,6 +885,14 @@

    Previous Releases

    + + + + + + + + diff --git a/April21/index.html b/April21/index.html index 43b658926..d9509aebc 100644 --- a/April21/index.html +++ b/April21/index.html @@ -197,6 +197,27 @@

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    + + + + + + +
  • December 2024 + Mesh_3 improvements -- Mesh_3 improvements in CGAL-6.0 +
  • + + + + + + + + + + + @@ -293,49 +314,6 @@

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    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
  • May 2024 - New in CGAL: Kinetic Space Partition and Kinetic Surface Reconstruction -
  • - - Older news and announcements... @@ -355,6 +333,11 @@

    Latest Releases

    + + + + +
  • Latest stable release: CGAL 6.0.1
  • @@ -865,6 +848,8 @@

    Latest Releases

    + + @@ -889,6 +874,14 @@

    Previous Releases

    + + + + + + + + diff --git a/April22/index.html b/April22/index.html index 5714ed508..35f0688f0 100644 --- a/April22/index.html +++ b/April22/index.html @@ -215,6 +215,27 @@

    Latest News

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    + + + + + + + + diff --git a/atom.xml b/atom.xml index 6660ae568..a2a81d9f3 100644 --- a/atom.xml +++ b/atom.xml @@ -4,7 +4,7 @@ CGAL - 2024-11-22T14:22:02+00:00 + 2024-11-26T09:44:14+00:00 http://www.cgal.org CGAL Editorial Board @@ -12,6 +12,123 @@ + + Mesh_3 improvements + + 2024-12-01T00:00:00+00:00 + http://www.cgal.org/2024/12/01/mesh3-improvements + +<h3><a href="https://geometryfactory.com/who-we-are/">Jane Tournois</a></h3> +<h4><a href="http://www.geometryfactory.com" target="_blank">GeometryFactory</a></h4> + +<p><br /></p> +<p>Introduced in CGAL 3.5, the package +<a href="https://doc.cgal.org/latest/Manual/packages.html#PkgMesh3" text="3D Mesh Generation">3D Mesh Generation</a> +is designed to generate a isotropic simplicial meshes discretizing 3D domains. +Since then, multiple improvements in mesh quality, performances, and versatility have been made available in CGAL. +Lately, CGAL authors have focused more on the quality of the output mesh, the ability of the +mesh generation algorithm to represent the input surface in a more accurate way, for a wider range of input data types. +</p> + +<p><br /></p> +<p>Recent releases of CGAL have introduced improvements to the 3D Tetrahedral Mesh Generation package: +detection and protection of triple lines from labeled images, +generation and use of weighted labeled images, +and a new approximation error criterion for polyline features.</p> + +<p><br /></p> +<h3>Triple lines from labeled images</h3> + +<p>CGAL's tetrahedral mesh generation algorithm is able to compute tetrahedral meshes from 3D segmented images. +For all types of inputs, detection and construction of one-dimensional features must be done a priori for the +feature protection algorithm to be able to represent them properly in the generated mesh. +In 3D segmented images, such features correspond to the intersections of the bounding box of the image with the surfaces +defined by the image, as well as polylines that lie at the intersection of three or more subdomains (including the outside).</p> + +<p>The article +<a href="https://opus4.kobv.de/opus4-zib/frontdoor/index/index/docId/274"><i>Hege, H. C., Seebass, M., Stalling, D., &amp; Zöckler, M. (1997), +A generalized marching cubes algorithm based on non-binary classifications</i></a>, provides a list of possible voxel configurations. +This description has been generalized for tetrahedral mesh generation needs, and +implemented in CGAL.</p> + +<p>After feature lines detection, similarly to what is done for polyhedral surfaces, the polyline features +are added to the feature graph of the domain for feature protection.</p> + +<p>Two detection functors are provided : +<ul> + <li><i>CGAL::Detect_features_in_image()</i> detects and constructs all + polylines lying at the intersection of three or more subdomains, and</li> + <li><i>CGAL::Detect_features_on_image_bbox()</i> detects and constructs the polylines + that lie at the intersection of two or more subdomains and the bounding box of the input labeled image.</li> +</ul> +</p> + +<div style="text-align:center;"> + <a href="../../../../images/mesh3_triple_lines_protection.png"><img src="../../../../images/mesh3_triple_lines_protection.png" style="max-width:95%" /></a><br /> + <br /><small>Mesh generation from labeled image without (left) + and with triple lines detection and protection (right). + The polylines lying at the intersection of three or more subdomains are + a lot more precise with a lot fewer vertices.</small> +</div> + +<p><br /></p> +<h3>Weighted Labeled Images</h3> + +<p>When a segmented image is given as input for tetrahedral mesh generation, +the generated mesh surface sometimes sticks too closely to the voxels surface, causing an aliasing effect. A solution to generate +a smooth and accurate output surface was described by Stalling et al in +<a href="https://opus4.kobv.de/opus4-zib/frontdoor/index/index/docId/382"><i>Stalling, D., Zöckler, M., Sander, O., &amp; Hege, H. C. (1998), +Weighted labels for 3D image segmentation</i></a>. +It consists in generating a second input image, made of integer coefficients called weights, and use those weights to define +smoother domain boundaries. The 3D image of weights can be generated by <i>CGAL::Mesh_3::generate_label_weights()</i>.</p> + +<div style="text-align:center;"> + <a href="../../../../images/mesh3_weighted_images.png"><img src="../../../../images/mesh3_weighted_images.png" style="max-width:95%" /></a><br /> + <br /><small>Mesh generation from labeled image without weights (left, 88,000 vertices) + and with weights (right, 67,000 vertices).</small> +</div> + +<p><br /></p> +<p>The following example shows how to use weighted labeled images: <a href="https://doc.cgal.org/6.0.1/Mesh_3/Mesh_3_2mesh_3D_weighted_image_8cpp-example.html">mesh_3D_weighted_image.cpp</a>.</p> + +<p>Utilizing tetrahedral mesh generation from labeled images, incorporating both feature detection and weighted labels, +presents challenges. A new method that combines feature detection and weighted labels has been +designed and implemented in CGAL, achieving smooth and feature preserving output meshes. +This method leverages the best of these two new functionalities.</p> + +<p><br /></p> +<h3>Approximation Criterion on Feature Edges</h3> + +<p>A Delaunay refinement algorithm is guided by meshing criteria that trigger Steiner vertices insertions, +until they are satisfied. +The list of CGAL meshing criteria has been enriched with a new criterion that enables the user to +define an upper bound on the distance between the input feature graph and the output feature edges.</p> + +<p>The following example shows how to use this new criterion, called <i>edge_distance</i>: +<a href="https://doc.cgal.org/6.0.1/Mesh_3/Mesh_3_2mesh_polyhedral_domain_with_edge_distance_8cpp-example.html"> +mesh_polyhedral_domain_with_edge_distance.cpp</a>.</p> + +<div style="text-align:center;"> + <a href="../../../../images/mesh3_edge_distance_stool.png"><img src="../../../../images/mesh3_edge_distance_stool.png" style="max-width:75%" /></a><br /> + <br /><small>Mesh generation from polyhedral surface with varying <i>edge_distance</i> meshing criterion. + The quality improvement is important on the lower end of stool feet.</small> +</div> + +<h3>Status</h3> + +<p>All these new improvements have been integrated in CGAL-6.0.1, which has just been officially released.</p> + +<p><i class="bi bi-book"></i> +<a href="https://www.cgal.org/2024/10/22/cgal601/">CGAL-6.0.1 announcement</a> +<br /> +<i class="bi bi-book"></i> +<a href="https://doc.cgal.org/latest/Manual/packages.html#PkgMesh3">Documentation of the package Mesh_3</a> +<br /> +<i class="bi bi-arrow-down-circle"></i> +<a href="https://github.com/CGAL/cgal/tree/master">CGAL master branch on GitHub</a></p> + + + New CGAL versions: 5.5.5, 5.6.2, 6.0, and 6.0.1 diff --git a/images/mesh3_edge_distance_stool.png b/images/mesh3_edge_distance_stool.png new file mode 100644 index 000000000..c449042ea Binary files /dev/null and b/images/mesh3_edge_distance_stool.png differ diff --git a/images/mesh3_triple_lines_protection.png b/images/mesh3_triple_lines_protection.png new file mode 100644 index 000000000..7023e4a24 Binary files /dev/null and b/images/mesh3_triple_lines_protection.png differ diff --git a/images/mesh3_weighted_images.png b/images/mesh3_weighted_images.png new file mode 100644 index 000000000..69c19c4da Binary files /dev/null and b/images/mesh3_weighted_images.png differ diff --git a/index.html b/index.html index 45a7567d0..edea21b85 100644 --- a/index.html +++ b/index.html @@ -237,6 +237,27 @@

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    Recent Posts

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  • New CGAL versions: 5.5.5, 5.6.2, 6.0, and 6.0.1 -
    October 2024
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    December 2024
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  • CGAL 6.0.1 released +
  • New CGAL versions: 5.5.5, 5.6.2, 6.0, and 6.0.1
    October 2024
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  • CGAL 5.6.2 released +
  • CGAL 6.0.1 released
    October 2024
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    October 2024
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    Recent Posts

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    October 2024
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    December 2024
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  • New CGAL versions: 5.5.5, 5.6.2, 6.0, and 6.0.1
    October 2024
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  • CGAL 6.0.1 released
    October 2024
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    October 2024
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    Recent Posts

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  • New CGAL versions: 5.5.5, 5.6.2, 6.0, and 6.0.1 -
    October 2024
  • +
  • Mesh_3 improvements +
    December 2024
  • -
  • CGAL 6.0.1 released +
  • New CGAL versions: 5.5.5, 5.6.2, 6.0, and 6.0.1
    October 2024
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  • CGAL 5.6.2 released +
  • CGAL 6.0.1 released
    October 2024
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  • CGAL 5.5.5 released +
  • CGAL 5.6.2 released
    October 2024
  • diff --git a/releases.html b/releases.html index 7d9a9fcac..806fb2d70 100644 --- a/releases.html +++ b/releases.html @@ -153,6 +153,13 @@

    Releases in reverse chronological order

    + + + + + + + diff --git a/rss.xml b/rss.xml index 47a5228b9..a1a2fbbeb 100644 --- a/rss.xml +++ b/rss.xml @@ -5,11 +5,128 @@ CGAL - CGAL Editorial Board http://www.cgal.org http://www.cgal.org - 2024-11-22T14:22:02+00:00 - 2024-11-22T14:22:02+00:00 + 2024-11-26T09:44:14+00:00 + 2024-11-26T09:44:14+00:00 1800 + + Mesh_3 improvements + +<h3><a href="https://geometryfactory.com/who-we-are/">Jane Tournois</a></h3> +<h4><a href="http://www.geometryfactory.com" target="_blank">GeometryFactory</a></h4> + +<p><br /></p> +<p>Introduced in CGAL 3.5, the package +<a href="https://doc.cgal.org/latest/Manual/packages.html#PkgMesh3" text="3D Mesh Generation">3D Mesh Generation</a> +is designed to generate a isotropic simplicial meshes discretizing 3D domains. +Since then, multiple improvements in mesh quality, performances, and versatility have been made available in CGAL. +Lately, CGAL authors have focused more on the quality of the output mesh, the ability of the +mesh generation algorithm to represent the input surface in a more accurate way, for a wider range of input data types. +</p> + +<p><br /></p> +<p>Recent releases of CGAL have introduced improvements to the 3D Tetrahedral Mesh Generation package: +detection and protection of triple lines from labeled images, +generation and use of weighted labeled images, +and a new approximation error criterion for polyline features.</p> + +<p><br /></p> +<h3>Triple lines from labeled images</h3> + +<p>CGAL's tetrahedral mesh generation algorithm is able to compute tetrahedral meshes from 3D segmented images. +For all types of inputs, detection and construction of one-dimensional features must be done a priori for the +feature protection algorithm to be able to represent them properly in the generated mesh. +In 3D segmented images, such features correspond to the intersections of the bounding box of the image with the surfaces +defined by the image, as well as polylines that lie at the intersection of three or more subdomains (including the outside).</p> + +<p>The article +<a href="https://opus4.kobv.de/opus4-zib/frontdoor/index/index/docId/274"><i>Hege, H. C., Seebass, M., Stalling, D., &amp; Zöckler, M. (1997), +A generalized marching cubes algorithm based on non-binary classifications</i></a>, provides a list of possible voxel configurations. +This description has been generalized for tetrahedral mesh generation needs, and +implemented in CGAL.</p> + +<p>After feature lines detection, similarly to what is done for polyhedral surfaces, the polyline features +are added to the feature graph of the domain for feature protection.</p> + +<p>Two detection functors are provided : +<ul> + <li><i>CGAL::Detect_features_in_image()</i> detects and constructs all + polylines lying at the intersection of three or more subdomains, and</li> + <li><i>CGAL::Detect_features_on_image_bbox()</i> detects and constructs the polylines + that lie at the intersection of two or more subdomains and the bounding box of the input labeled image.</li> +</ul> +</p> + +<div style="text-align:center;"> + <a href="../../../../images/mesh3_triple_lines_protection.png"><img src="../../../../images/mesh3_triple_lines_protection.png" style="max-width:95%" /></a><br /> + <br /><small>Mesh generation from labeled image without (left) + and with triple lines detection and protection (right). + The polylines lying at the intersection of three or more subdomains are + a lot more precise with a lot fewer vertices.</small> +</div> + +<p><br /></p> +<h3>Weighted Labeled Images</h3> + +<p>When a segmented image is given as input for tetrahedral mesh generation, +the generated mesh surface sometimes sticks too closely to the voxels surface, causing an aliasing effect. A solution to generate +a smooth and accurate output surface was described by Stalling et al in +<a href="https://opus4.kobv.de/opus4-zib/frontdoor/index/index/docId/382"><i>Stalling, D., Zöckler, M., Sander, O., &amp; Hege, H. C. (1998), +Weighted labels for 3D image segmentation</i></a>. +It consists in generating a second input image, made of integer coefficients called weights, and use those weights to define +smoother domain boundaries. The 3D image of weights can be generated by <i>CGAL::Mesh_3::generate_label_weights()</i>.</p> + +<div style="text-align:center;"> + <a href="../../../../images/mesh3_weighted_images.png"><img src="../../../../images/mesh3_weighted_images.png" style="max-width:95%" /></a><br /> + <br /><small>Mesh generation from labeled image without weights (left, 88,000 vertices) + and with weights (right, 67,000 vertices).</small> +</div> + +<p><br /></p> +<p>The following example shows how to use weighted labeled images: <a href="https://doc.cgal.org/6.0.1/Mesh_3/Mesh_3_2mesh_3D_weighted_image_8cpp-example.html">mesh_3D_weighted_image.cpp</a>.</p> + +<p>Utilizing tetrahedral mesh generation from labeled images, incorporating both feature detection and weighted labels, +presents challenges. A new method that combines feature detection and weighted labels has been +designed and implemented in CGAL, achieving smooth and feature preserving output meshes. +This method leverages the best of these two new functionalities.</p> + +<p><br /></p> +<h3>Approximation Criterion on Feature Edges</h3> + +<p>A Delaunay refinement algorithm is guided by meshing criteria that trigger Steiner vertices insertions, +until they are satisfied. +The list of CGAL meshing criteria has been enriched with a new criterion that enables the user to +define an upper bound on the distance between the input feature graph and the output feature edges.</p> + +<p>The following example shows how to use this new criterion, called <i>edge_distance</i>: +<a href="https://doc.cgal.org/6.0.1/Mesh_3/Mesh_3_2mesh_polyhedral_domain_with_edge_distance_8cpp-example.html"> +mesh_polyhedral_domain_with_edge_distance.cpp</a>.</p> + +<div style="text-align:center;"> + <a href="../../../../images/mesh3_edge_distance_stool.png"><img src="../../../../images/mesh3_edge_distance_stool.png" style="max-width:75%" /></a><br /> + <br /><small>Mesh generation from polyhedral surface with varying <i>edge_distance</i> meshing criterion. + The quality improvement is important on the lower end of stool feet.</small> +</div> + +<h3>Status</h3> + +<p>All these new improvements have been integrated in CGAL-6.0.1, which has just been officially released.</p> + +<p><i class="bi bi-book"></i> +<a href="https://www.cgal.org/2024/10/22/cgal601/">CGAL-6.0.1 announcement</a> +<br /> +<i class="bi bi-book"></i> +<a href="https://doc.cgal.org/latest/Manual/packages.html#PkgMesh3">Documentation of the package Mesh_3</a> +<br /> +<i class="bi bi-arrow-down-circle"></i> +<a href="https://github.com/CGAL/cgal/tree/master">CGAL master branch on GitHub</a></p> + + http://www.cgal.org/2024/12/01/mesh3-improvements/ + http://www.cgal.org/2024/12/01/mesh3-improvements + 2024-12-01T00:00:00+00:00 + + New CGAL versions: 5.5.5, 5.6.2, 6.0, and 6.0.1