diff --git a/.github/workflows/test_simpleaf.yml b/.github/workflows/test_simpleaf.yml index d415087..12c0ec6 100644 --- a/.github/workflows/test_simpleaf.yml +++ b/.github/workflows/test_simpleaf.yml @@ -14,7 +14,7 @@ jobs: if: "!contains(github.event.head_commit.message, 'skip ci')" strategy: matrix: - os: [ubuntu-20.04, macos-13] + os: [ubuntu-latest, macos-13] runs-on: ${{ matrix.os }} steps: - name: Checkout repository @@ -44,10 +44,7 @@ jobs: - name: Test simpleaf shell: bash -l {0} run: | - export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/share/miniconda/envs/anaconda-client-env/lib:/usr/share/miniconda/envs/anaconda-client-env/lib64 ls /usr/share/miniconda/envs/anaconda-client-env/lib - conda activate anaconda-client-env - salmon -v cd scripts chmod +x test_simpleaf.sh ./test_simpleaf.sh diff --git a/simpleaf_conda_env.yml b/simpleaf_conda_env.yml index 76668c4..90142dd 100644 --- a/simpleaf_conda_env.yml +++ b/simpleaf_conda_env.yml @@ -6,6 +6,7 @@ channels: - bioconda dependencies: + - libboost>=1.85.0 - salmon>=1.10.3 - alevin-fry>=0.8.2 - piscem>=0.9.0