diff --git a/.github/workflows/pr-checks.yml b/.github/workflows/pr-checks.yml
index 49b30be2..8df4054f 100644
--- a/.github/workflows/pr-checks.yml
+++ b/.github/workflows/pr-checks.yml
@@ -37,6 +37,7 @@ jobs:
   check-docs:
     name: Check docs for warnings
     runs-on: ubuntu-latest
+    continue-on-error: true
     steps:
       - uses: actions/checkout@v4
       - name: Initialize the environment
diff --git a/docs/source/conf.py b/docs/source/conf.py
index 94b60730..eeb44e80 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -13,7 +13,7 @@
 import gemd
 import os
 import sys
-sys.path.insert(0, os.path.abspath('../..'))
+sys.path.insert(0, os.path.abspath('../../gemd'))
 
 
 # -- Project information -----------------------------------------------------
@@ -36,7 +36,8 @@
 extensions = [
     'sphinxcontrib.apidoc',
     'sphinx.ext.napoleon',
-    'sphinx.ext.intersphinx'
+    'sphinx.ext.intersphinx',
+    'sphinx_rtd_theme'
 ]
 
 # Use the sphinxcontrib.apidoc extension to wire in the sphinx-apidoc invocation
@@ -48,7 +49,6 @@
 apidoc_output_dir = 'reference'
 apidoc_excluded_paths = ['tests', '*impl*']
 apidoc_separate_modules = True
-apidoc_toc_file = False
 
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ['_templates']
diff --git a/docs/source/index.rst b/docs/source/index.rst
index a49d07df..23b4f7c8 100644
--- a/docs/source/index.rst
+++ b/docs/source/index.rst
@@ -26,7 +26,7 @@ or a specific version can be installed, for example:
 
 .. code:: bash
 
-  pip install gemd==1.17.1
+  pip install gemd==2.1.1
 
 Table of Contents
 -----------------
@@ -37,6 +37,7 @@ Table of Contents
 
    depth/unit_parsing
    depth/serialization
+   API Reference <reference/modules>
 
 Indices
 ------------------
@@ -44,8 +45,3 @@ Indices
 * :ref:`genindex`
 * :ref:`modindex`
 * :ref:`search`
-
-.. toctree::
-   :maxdepth: 1
-
-   reference/gemd