From 513b9f4d2546629258c0448a5dcd945db70bc504 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Karl=20Sv=C3=A4rd?= Date: Mon, 9 Dec 2024 12:59:12 +0100 Subject: [PATCH] move movie udf to artifact --- cg_lims/EPPs/files/smrt_link/models.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/cg_lims/EPPs/files/smrt_link/models.py b/cg_lims/EPPs/files/smrt_link/models.py index f88d42db..96937ebe 100644 --- a/cg_lims/EPPs/files/smrt_link/models.py +++ b/cg_lims/EPPs/files/smrt_link/models.py @@ -195,7 +195,6 @@ class RevioRun: plate_2_type: Optional[str] file_version: int = 1 run_comments: Optional[str] - movie_acquisition_time: int adaptive_loading: bool = True base_kinetics: bool = False consensus_mode: bool = True @@ -210,7 +209,6 @@ def __init__(self, process: Process): self.plate_1_type = process.udf.get("Plate 1 Type") self.plate_2_type = process.udf.get("Plate 2 Type") self.run_comments = f"Generated by automation in Clarity LIMS step {process.id}" - self.movie_acquisition_time = process.udf.get("Movie Acquisition Time (hours)") self.adaptive_loading = process.udf.get("Adaptive Loading") self.base_kinetics = process.udf.get("Include Base Kinetics") self.consensus_mode = process.udf.get("Consensus Mode") @@ -262,7 +260,7 @@ def _create_smrt_cell_settings(self) -> str: pool.udf.get("Library Type"), pool.udf.get("Revio Application"), POLYMERASE_KITS[pool.udf.get("Polymerase Kit")], - self.movie_acquisition_time, + pool.udf.get("Movie Acquisition Time (hours)"), pool.udf.get("Mean Size (bp)"), pool.udf.get("Library Concentration (pM)"), self.adaptive_loading,