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Check if reference_length is set before showing Tests #58: Commit 635de3c pushed by samuell
September 16, 2024 14:05 3m 28s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 16, 2024 14:05 3m 28s
Check if reference_length is set before showing Tests #57: Commit 33d00c2 pushed by samuell
September 16, 2024 13:31 4m 37s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 16, 2024 13:31 4m 37s
Update testdata to use Skesa output with Spades format Tests #56: Commit 904d97b pushed by samuell
September 13, 2024 15:20 3m 42s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 13, 2024 15:20 3m 42s
Fix bug in skesa output file path Tests #55: Commit 78b447f pushed by samuell
September 13, 2024 13:35 4m 18s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 13, 2024 13:35 4m 18s
Use original file name for main contig file Tests #54: Commit e2f7f3e pushed by samuell
September 13, 2024 12:50 3m 46s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 13, 2024 12:50 3m 46s
Fix it even more Tests #53: Commit bd0a67c pushed by samuell
September 13, 2024 10:38 4m 17s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 13, 2024 10:38 4m 17s
Fix f-string backslash error Tests #52: Commit d599a80 pushed by samuell
September 13, 2024 10:34 3m 31s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 13, 2024 10:34 3m 31s
Convert sequence naming in Skesa contigs fasta file into Spades format Tests #51: Commit 9df4e18 pushed by samuell
September 13, 2024 10:25 1m 44s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 13, 2024 10:25 1m 44s
Simplify creation of contigs file Tests #50: Commit 22525e8 pushed by samuell
September 13, 2024 10:03 4m 18s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 13, 2024 10:03 4m 18s
Compute contig lengths with seqkit and write to a tsv file Tests #49: Commit 23d255c pushed by samuell
September 12, 2024 14:59 3m 23s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 12, 2024 14:59 3m 23s
Compute contig lenghts with seqkit and write to a tsv file Tests #48: Commit c8f1c09 pushed by samuell
September 12, 2024 14:58 3m 24s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 12, 2024 14:58 3m 24s
Write out a file with the contig lengths Tests #47: Commit 3ab61a0 pushed by samuell
September 12, 2024 14:44 6m 6s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
September 12, 2024 14:44 6m 6s
Don't quench exceptions in scraper Tests #46: Commit a54c085 pushed by samuell
August 26, 2024 14:58 3m 34s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
August 26, 2024 14:58 3m 34s
Don't quench exception Tests #45: Commit 6a0ae58 pushed by samuell
August 26, 2024 13:25 4m 0s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
August 26, 2024 13:25 4m 0s
Parse contig length and derived metrics from new subject_length colum… Tests #44: Commit b9364c5 pushed by samuell
August 23, 2024 15:57 3m 39s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
August 23, 2024 15:57 3m 39s
Replace blaVIM test data with output from SKESA Tests #43: Commit 0bfbf16 pushed by samuell
August 23, 2024 15:09 3m 37s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
August 23, 2024 15:09 3m 37s
Replace Spades assembler with SKESA Tests #42: Commit a0b1f30 pushed by samuell
August 22, 2024 16:17 3m 41s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
August 22, 2024 16:17 3m 41s
Replace Spades assembler with SKESA Tests #41: Commit 9938445 pushed by samuell
August 22, 2024 16:15 1m 49s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
August 22, 2024 16:15 1m 49s
Fix code that would delete blast matches with identical coverage Tests #40: Commit 676044c pushed by samuell
August 22, 2024 14:12 4m 10s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
August 22, 2024 14:12 4m 10s
Simplify check for genes in test Tests #39: Commit dfb122b pushed by samuell
August 22, 2024 14:09 3m 33s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
August 22, 2024 14:09 3m 33s
149 fix missing resistances (#179) Tests #38: Commit 1ab5a51 pushed by samuell
August 22, 2024 14:03 6m 52s 180-fix-missing-vim-genes
180-fix-missing-vim-genes
August 22, 2024 14:03 6m 52s
149 fix missing resistances (#179) Tests #37: Commit 1ab5a51 pushed by samuell
August 22, 2024 11:07 6m 5s rc400
rc400
August 22, 2024 11:07 6m 5s
Fix #149 by making regex specific and not matching multiple genes Tests #36: Commit c169d29 pushed by samuell
August 22, 2024 10:59 5m 58s 149-fix-missing-resistances
149-fix-missing-resistances
August 22, 2024 10:59 5m 58s
Simplify check for genes in test Tests #35: Commit 8bf9540 pushed by samuell
August 14, 2024 07:26 3m 40s 149-fix-missing-resistances
149-fix-missing-resistances
August 14, 2024 07:26 3m 40s
Keep only 100% identity matches Tests #34: Commit bdf94c7 pushed by samuell
August 13, 2024 16:45 3m 52s 149-fix-missing-resistances
149-fix-missing-resistances
August 13, 2024 16:45 3m 52s