diff --git a/install.sh b/install.sh index b8d8e640..391f1518 100644 --- a/install.sh +++ b/install.sh @@ -1,6 +1,7 @@ #!/usr/bin/env bash set -e +set -x shopt -s nullglob #Suggests provided branch. Else suggests master @@ -56,7 +57,7 @@ micromamba info | tac | tac | grep -q $cname && source deactivate || : #Remove environment if already present micromamba remove -y -n $cname --all || : -micromamba env create -n $cname -f <(curl -L https://raw.githubusercontent.com/Clinical-Genomics/microSALT/$branch/environment.yml) +micromamba env create -y -n $cname -f <(curl -L https://raw.githubusercontent.com/Clinical-Genomics/microSALT/$branch/environment.yml) source activate $cname if [[ $type == "release" ]]; then