diff --git a/docker/celery/requirements.txt b/docker/celery/requirements.txt index 81ce003..15d4d7b 100644 --- a/docker/celery/requirements.txt +++ b/docker/celery/requirements.txt @@ -6,7 +6,7 @@ uvicorn~=0.29.0 python-multipart~=0.0.5 ijson~=3.1.4 python-dotenv~=0.20.0 -mlflow~=2.14.3 +mlflow~=2.16.2 psycopg2-binary~=2.9.4 boto3~=1.28.84 typer~=0.7.0 diff --git a/docker/medcat-deid/Dockerfile b/docker/medcat-deid/Dockerfile index 9ea571a..06367e2 100644 --- a/docker/medcat-deid/Dockerfile +++ b/docker/medcat-deid/Dockerfile @@ -30,7 +30,7 @@ RUN mkdir -p /app/model/model && \ mkdir -p /app/model/retrained && \ chown -R $CMS_UID:$CMS_GID /app RUN pip install --no-cache-dir -U pip &&\ - pip install --no-cache-dir -r requirements.txt && \ + pip install --no-cache-dir -r /app/requirements.txt && \ python -m spacy download en_core_web_md WORKDIR /app diff --git a/docker/medcat-deid/requirements.txt b/docker/medcat-deid/requirements.txt index 9205089..9280804 100644 --- a/docker/medcat-deid/requirements.txt +++ b/docker/medcat-deid/requirements.txt @@ -6,7 +6,7 @@ uvicorn~=0.29.0 python-multipart~=0.0.5 ijson~=3.1.4 python-dotenv~=0.20.0 -mlflow~=2.14.3 +mlflow~=2.16.2 psycopg2-binary~=2.9.4 boto3~=1.28.84 typer~=0.7.0 diff --git a/docker/medcat-icd10/Dockerfile b/docker/medcat-icd10/Dockerfile index 19fc761..c879794 100644 --- a/docker/medcat-icd10/Dockerfile +++ b/docker/medcat-icd10/Dockerfile @@ -30,7 +30,7 @@ RUN mkdir -p /app/model/model && \ mkdir -p /app/model/retrained && \ chown -R $CMS_UID:$CMS_GID /app RUN pip install --no-cache-dir -U pip &&\ - pip install --no-cache-dir -r requirements.txt && \ + pip install --no-cache-dir -r /app/requirements.txt && \ python -m spacy download en_core_web_md WORKDIR /app diff --git a/docker/medcat-icd10/requirements.txt b/docker/medcat-icd10/requirements.txt index 57594ed..bc2884e 100644 --- a/docker/medcat-icd10/requirements.txt +++ b/docker/medcat-icd10/requirements.txt @@ -5,7 +5,7 @@ uvicorn~=0.29.0 python-multipart~=0.0.5 ijson~=3.1.4 python-dotenv~=0.20.0 -mlflow~=2.14.3 +mlflow~=2.16.2 psycopg2-binary~=2.9.4 boto3~=1.28.84 typer~=0.7.0 diff --git a/docker/medcat-snomed/Dockerfile b/docker/medcat-snomed/Dockerfile index fd6afdd..b62e96c 100644 --- a/docker/medcat-snomed/Dockerfile +++ b/docker/medcat-snomed/Dockerfile @@ -31,7 +31,7 @@ RUN mkdir -p /app/model/model && \ mkdir -p /app/model/retrained && \ chown -R $CMS_UID:$CMS_GID /app RUN pip install --no-cache-dir -U pip &&\ - pip install --no-cache-dir -r requirements.txt && \ + pip install --no-cache-dir -r /app/requirements.txt && \ python -m spacy download en_core_web_md WORKDIR /app diff --git a/docker/medcat-snomed/requirements.txt b/docker/medcat-snomed/requirements.txt index 57594ed..bc2884e 100644 --- a/docker/medcat-snomed/requirements.txt +++ b/docker/medcat-snomed/requirements.txt @@ -5,7 +5,7 @@ uvicorn~=0.29.0 python-multipart~=0.0.5 ijson~=3.1.4 python-dotenv~=0.20.0 -mlflow~=2.14.3 +mlflow~=2.16.2 psycopg2-binary~=2.9.4 boto3~=1.28.84 typer~=0.7.0 diff --git a/docker/medcat-umls/Dockerfile b/docker/medcat-umls/Dockerfile index c098208..93d2e54 100644 --- a/docker/medcat-umls/Dockerfile +++ b/docker/medcat-umls/Dockerfile @@ -30,7 +30,7 @@ RUN mkdir -p /app/model/model && \ mkdir -p /app/model/retrained && \ chown -R $CMS_UID:$CMS_GID /app RUN pip install --no-cache-dir -U pip &&\ - pip install --no-cache-dir -r requirements.txt && \ + pip install --no-cache-dir -r /app/requirements.txt && \ python -m spacy download en_core_web_md WORKDIR /app diff --git a/docker/medcat-umls/requirements.txt b/docker/medcat-umls/requirements.txt index 57594ed..bc2884e 100644 --- a/docker/medcat-umls/requirements.txt +++ b/docker/medcat-umls/requirements.txt @@ -5,7 +5,7 @@ uvicorn~=0.29.0 python-multipart~=0.0.5 ijson~=3.1.4 python-dotenv~=0.20.0 -mlflow~=2.14.3 +mlflow~=2.16.2 psycopg2-binary~=2.9.4 boto3~=1.28.84 typer~=0.7.0 diff --git a/docker/mlflow/models/requirements.txt b/docker/mlflow/models/requirements.txt index 33cae00..d36d973 100644 --- a/docker/mlflow/models/requirements.txt +++ b/docker/mlflow/models/requirements.txt @@ -1,4 +1,4 @@ -mlflow~=2.14.3 +mlflow~=2.16.2 psycopg2-binary~=2.9.4 boto3~=1.28.84 setuptools diff --git a/docker/mlflow/server/crontab.txt b/docker/mlflow/server/crontab.txt index dd0d8ab..500fba7 100644 --- a/docker/mlflow/server/crontab.txt +++ b/docker/mlflow/server/crontab.txt @@ -1 +1 @@ -* * * * * /usr/local/bin/mlflow gc --backend-store-uri ${MLFLOW_BACKEND_STORE_URI} +0-30 0 * * * /usr/local/bin/mlflow gc --backend-store-uri ${MLFLOW_BACKEND_STORE_URI} diff --git a/docker/mlflow/server/requirements.txt b/docker/mlflow/server/requirements.txt index 33cae00..d36d973 100644 --- a/docker/mlflow/server/requirements.txt +++ b/docker/mlflow/server/requirements.txt @@ -1,4 +1,4 @@ -mlflow~=2.14.3 +mlflow~=2.16.2 psycopg2-binary~=2.9.4 boto3~=1.28.84 setuptools diff --git a/docker/trf-deid/Dockerfile b/docker/trf-deid/Dockerfile index 6079573..34531bd 100644 --- a/docker/trf-deid/Dockerfile +++ b/docker/trf-deid/Dockerfile @@ -30,7 +30,7 @@ RUN mkdir -p /app/model/model && \ mkdir -p /app/model/retrained && \ chown -R $CMS_UID:$CMS_GID /app RUN pip install --no-cache-dir -U pip &&\ - pip install --no-cache-dir -r requirements.txt && \ + pip install --no-cache-dir -r /app/requirements.txt && \ python -m spacy download en_core_web_md WORKDIR /app diff --git a/docker/trf-deid/requirements.txt b/docker/trf-deid/requirements.txt index 7f24ad9..cc9e2b1 100644 --- a/docker/trf-deid/requirements.txt +++ b/docker/trf-deid/requirements.txt @@ -5,7 +5,7 @@ uvicorn~=0.29.0 python-multipart~=0.0.5 ijson~=3.1.4 python-dotenv~=0.20.0 -mlflow~=2.14.3 +mlflow~=2.16.2 psycopg2-binary~=2.9.4 boto3~=1.28.84 typer~=0.7.0 diff --git a/pyproject.toml b/pyproject.toml index af91a02..7ee8cfa 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -17,7 +17,7 @@ dependencies = [ "python-multipart~=0.0.5", "ijson~=3.1.4", "python-dotenv~=0.20.0", - "mlflow~=2.14.3", + "mlflow~=2.16.2", "psycopg2-binary~=2.9.4", "boto3~=1.28.84", "typer~=0.12.3",