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HierarchicalGroups.orthoxml file contains all splicing variants #8

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alpae opened this issue Feb 9, 2023 · 0 comments
Open

HierarchicalGroups.orthoxml file contains all splicing variants #8

alpae opened this issue Feb 9, 2023 · 0 comments

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@alpae
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alpae commented Feb 9, 2023

The HierarchicalGroups.orthoxml file contains all splicing variants as individual genes in the header part. As only one (the infered main isoform) will appear in any orthology relation, tools like pyham will list the alternative isoforms as species specific gene gains, which is wrong.
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