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angular-example.html
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<!doctype html>
<html>
<head>
<link rel='stylesheet prefetch' href='bower_components/angular-material/angular-material.min.css'>
</head>
<body>
<div ng-app="myApp" ng-controller="testContrl" layout="column" resize>
<br>
<br>
<h3><b>Seed Coverage and Whisker Plots</b></h3>
<hr> Representation of the #### seed alignment sequences, indicating their length distribution across the model as well as the overall depth of coverage.
<br>
<br>
<div layout="column" flex>
<div layout="row" layout-margin>
<alignheatmap flex="95" align-data="summaryData"></alignheatmap>
</div>
</div>
<div layout="row">
<input type="button" value="Load Data" ng-click="addData();" />
</div>
</div>
<script src='bower_components/angular/angular.min.js'></script>
<script src='bower_components/angular-animate/angular-animate.min.js'></script>
<script src='bower_components/angular-aria/angular-aria.min.js'></script>
<script src='bower_components/angular-material/angular-material.min.js'></script>
<script src='dist/AlignmentSummaryViewer.min.js'></script>
<script>
var myApp = angular.module('myApp', ['ngMaterial']);
myApp.directive('resize', function($window) {
return {
link: function(scope) {
function onResize(e) {
// Namespacing events with name of directive + event to avoid collisions
scope.$broadcast('resize::resize');
}
function cleanUp() {
angular.element($window).off('resize', onResize);
}
angular.element($window).on('resize', onResize);
scope.$on('$destroy', cleanUp);
}
}
});
myApp.directive('alignheatmap', function() {
return {
restrict: 'E',
template: '<div style="position:relative;"></div>',
scope: {
alignData: '=alignData',
width: '=width',
height: '=height'
},
link: function(scope, el, attrs) {
var mySummary;
var align_canvas = document.createElement('canvas');
// The template div is a child of the directive (el)
// Since there is only one child the parent for the canvas
// will be:
var parent_element = el.children()[0];
parent_element.append(align_canvas);
scope.$watch('alignData', function(newValue) {
onDataChange();
});
scope.$on('resize::resize', function() {
if (mySummary != null) {
// resize and render
mySummary.resize();
}
});
// TODO: important. What exactly do we need to cleanup in a directive to avoid
// a memory leak? I.e
// scope.$on('$destroy', () => {
// $element[0].removeEventListener('dragleave', fileDragleave)
// $element[0].removeEventListener('dragover', fileDragover)
// $element[0].removeEventListener('drop', fileDrop)
// })
function onDataChange() {
if (scope.alignData != null && scope.alignData.alignments != null &&
scope.alignData.alignments.length > 0) {
if ( mySummary != null ) {
mySummary.setData(scope.alignData);
}else {
mySummary = new AlignmentSummaryViewer(align_canvas, parent_element, scope.alignData, {});
}
}
}
}
}
});
myApp.controller('testContrl', ['$scope', function($scope) {
$scope.summaryData = null;
$scope.addData = function() {
$scope.summaryData = {
"qualityBlockLen": 10,
"length": 804,
"alignments": [
["JH823257_483_16217_16763", 762, 42, [10, 10, 9, 3, 8], "R", "0.05", "188", "230"],
["JH823257_483_16217_16763", 1, 144, [9, 10, 10, 10, 7, 9, 9, 8, 8, 8, 8, 8, 10, 8], "F", "0.13", "201", "347"],
["JH823257_2344_6230_7176_R", 1, 650, [9, 8, 9, 10, 9, 9, 8, 7, 8, 8, 10, 10, 10, 9, 7, 9, 9, 7, 8, 3, 9, 9, 4, 3, 8, 8, 8, 8, 8, 10, 9, 10, 7, 7, 10, 9, 8, 8, 9, 9, 10, 8, 6, 10, 9, 4, 8, 8, 9, 9, 7, 10, 10, 8, 10, 8, 10, 8, 8, 8, 8, 9, 9, 9, 9], "F", "0.14", "201", "833"],
["JH823258_1325_30005_30550", 1, 148, [9, 8, 10, 8, 10, 9, 10, 9, 9, 9, 8, 8, 9, 9, 9], "F", "0.10", "201", "349"],
["JH823258_1959_12876_13522_R", 3, 307, [9, 10, 7, 8, 10, 8, 10, 8, 8, 9, 8, 9, 9, 9, 8, 10, 6, 9, 10, 9, 10, 8, 10, 8, 8, 7, 6, 8, 10, 7, 8], "F", "0.14", "203", "510"],
["JH823258_2270_12375_13223_R", 1, 597, [8, 9, 9, 10, 10, 8, 10, 8, 9, 9, 10, 8, 9, 7, 8, 9, 10, 6, 8, 8, 9, 9, 10, 7, 7, 8, 8, 5, 2, 9, 8, 8, 7, 7, 10, 10, 9, 7, 6, 2, 7, 7, 8, 8, 4, 1, 6, 9, 7, 6, 7, 8, 8, 9, 6, 8, 8, 8, 9], "F", "0.19", "201", "755"],
["JH823258_3758_7079_8129", 1, 804, [8, 8, 10, 9, 10, 7, 9, 9, 9, 9, 9, 9, 9, 9, 8, 10, 4, 9, 8, 5, 8, 4, 2, 6, 9, 5, 9, 8, 7, 9, 7, 8, 8, 8, 7, 9, 8, 7, 9, 5, 3, 7, 10, 9, 7, 8, 7, 10, 8, 10, 8, 6, 9, 8, 9, 9, 6, 7, 8, 7, 8, 8, 5, 8, 8, 7, 6, 10, 10, 6, 6, 9, 6, 8, 8, 9, 9, 7, 7, 5, 6], "F", "0.22", "201", "1026"],
["JH823259_1059_1184_1714_R", 18, 187, [10, 7, 9, 8, 9, 9, 10, 8, 9, 10, 10, 9, 10, 6, 10, 7, 6, 8, 8], "F", "0.13", "203", "383"],
["JH823259_1087_137374_137917_R", 43, 219, [9, 7, 7, 6, 10, 5, 7, 9, 9, 8, 8, 8, 6, 7, 5, 9, 9, 7, 8, 10, 9, 8], "R", "0.16", "3", "204"],
["JH823259_1087_137374_137917_R", 3, 171, [8, 9, 10, 10, 10, 9, 10, 7, 9, 8, 7, 9, 10, 7, 8, 8, 8], "F", "0.15", "201", "370"],
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["JH823260_1062_35269_35805", 1, 166, [9, 10, 9, 9, 10, 8, 10, 8, 8, 7, 9, 10, 9, 7, 5, 9, 9], "F", "0.13", "201", "361"],
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["JH823261_2398_9169_9715_R", 1, 147, [9, 8, 10, 10, 8, 9, 9, 8, 10, 6, 8, 9, 9, 10], "F", "0.13", "201", "347"],
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["JH823262_770_3709_4751", 272, 319, [8, 10, 9, 8, 7, 4, 8, 9, 9, 7, 9, 9, 7, 9, 8, 8, 9, 9, 7, 8, 6, 10, 10, 9, 9, 10, 7, 10, 9, 9, 10, 7], "F", "0.15", "511", "846"],
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["JH823262_1470_13137_13782_R", 1, 151, [8, 9, 10, 9, 10, 7, 9, 8, 10, 8, 9, 10, 8, 8, 8], "F", "0.13", "201", "350"],
["JH823262_1470_13137_13782_R", 146, 58, [9, 8, 10, 7, 9, 9], "F", "0.14", "488", "549"],
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["JH823262_1482_5018_5552_R", 167, 128, [8, 9, 9, 10, 8, 7, 8, 9, 8, 7, 9, 8], "F", "0.15", "336", "460"],
["JH823262_1486_2975_3517", 5, 147, [9, 8, 10, 10, 9, 8, 8, 8, 8, 9, 10, 10, 9, 10, 9], "F", "0.11", "201", "347"],
["JH823262_1652_33701_34746_R", 1, 161, [9, 8, 9, 7, 10, 9, 10, 8, 9, 9, 9, 9, 10, 8, 9, 9], "F", "0.12", "201", "360"],
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["JH823263_41_20090_20634", 2, 145, [9, 9, 8, 9, 8, 8, 6, 9, 9, 8, 10, 9, 10, 10], "F", "0.14", "201", "345"],
["JH823263_164_38867_39409_R", 5, 167, [10, 10, 10, 8, 9, 10, 8, 6, 10, 8, 9, 9, 8, 9, 8, 9, 9], "F", "0.11", "201", "367"],
["JH823263_199_12304_12850", 1, 169, [9, 10, 9, 9, 7, 7, 9, 9, 8, 9, 9, 10, 9, 9, 8, 7, 8], "F", "0.14", "201", "366"],
["JH823263_247_276661_277165", 1, 156, [6, 9, 8, 10, 10, 8, 10, 9, 10, 9, 7, 6, 10, 9, 9], "F", "0.12", "201", "353"],
["JH823263_842_201612_202958", 1, 548, [9, 9, 7, 9, 10, 9, 10, 8, 8, 9, 10, 10, 8, 10, 8, 8, 9, 9, 9, 9, 8, 6, 10, 8, 9, 9, 9, 7, 8, 10, 7, 8, 9, 7, 7, 9, 8, 8, 8, 7, 8, 9, 7, 9, 8, 8, 6, 9, 9, 9, 9, 9, 10, 8], "F", "0.14", "201", "744"],
["JH823263_842_201612_202958", 536, 115, [7, 9, 8, 8, 8, 7, 9, 6, 8, 7, 6], "F", "0.25", "945", "1055"],
["JH823263_842_201612_202958", 654, 134, [9, 7, 10, 7, 5, 7, 8, 10, 9, 6, 9, 8, 6, 9], "F", "0.18", "1197", "1319"],
["JH823263_946_77029_77771_R", 15, 419, [10, 9, 9, 7, 10, 9, 9, 9, 9, 9, 10, 10, 10, 6, 8, 4, 10, 7, 8, 10, 9, 10, 10, 8, 9, 7, 9, 10, 8, 10, 6, 10, 8, 10, 7, 9, 9, 8, 9, 9, 8], "F", "0.13", "212", "626"],
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["JH823264_1037_2705_3646_R", 6, 451, [9, 9, 9, 9, 9, 10, 8, 9, 6, 10, 9, 9, 10, 9, 8, 9, 4, 9, 8, 7, 8, 10, 7, 10, 10, 7, 5, 6, 5, 5, 8, 7, 7, 7, 7, 10, 7, 1, 9, 7, 8, 5, 10, 8, 8], "F", "0.20", "201", "627"],
["JH823264_1037_2705_3646_R", 521, 263, [8, 10, 8, 6, 8, 8, 8, 6, 6, 6, 6, 8, 9, 9, 7, 9, 8, 8, 9, 9, 8, 9, 9, 7, 10, 8], "F", "0.21", "623", "883"],
["JH823264_1084_8942_9488_R", 1, 155, [8, 10, 8, 10, 10, 8, 10, 10, 7, 8, 10, 10, 7, 8, 9, 9], "F", "0.13", "201", "355"],
["JH823264_1431_103841_104387_R", 1, 235, [8, 10, 7, 10, 9, 9, 10, 9, 9, 8, 9, 10, 10, 9, 9, 8, 9, 9, 9, 9, 9, 9, 8, 8], "F", "0.11", "201", "434"],
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["JH823264_1488_47531_48273", 291, 51, [10, 7, 8, 8, 8], "F", "0.16", "687", "738"],
["JH823264_1489_68154_69192_R", 7, 163, [10, 10, 8, 8, 9, 8, 9, 10, 8, 10, 7, 9, 9, 10, 8, 8], "F", "0.10", "201", "361"],
["JH823264_1489_68154_69192_R", 171, 478, [9, 9, 6, 9, 9, 8, 10, 7, 7, 9, 8, 6, 4, 6, 8, 8, 9, 9, 9, 9, 10, 8, 6, 10, 9, 10, 7, 8, 10, 8, 9, 8, 8, 9, 7, 9, 9, 7, 5, 8, 10, 7, 8, 8, 6, 8, 7], "F", "0.19", "474", "950"],
["JH823264_1545_36719_37265", 762, 42, [10, 9, 7, 3, 8], "R", "0.17", "191", "232"],
["JH823264_1545_36719_37265", 3, 209, [8, 9, 9, 9, 10, 9, 9, 9, 10, 7, 7, 10, 10, 7, 9, 9, 6, 9, 7, 7, 8], "F", "0.15", "205", "408"],
["JH823265_190_1_403", 1, 152, [9, 9, 9, 7, 10, 9, 10, 9, 10, 7, 8, 10, 9, 8, 7], "F", "0.14", "57", "208"],
["JH823265_247_71442_72484_R", 5, 790, [9, 10, 7, 10, 9, 9, 9, 10, 9, 10, 7, 10, 10, 8, 8, 8, 8, 10, 10, 9, 9, 10, 9, 10, 9, 6, 7, 8, 10, 6, 6, 2, 4, 6, 7, 8, 10, 9, 8, 7, 8, 6, 9, 9, 6, 5, 7, 10, 5, 3, 10, 6, 10, 8, 9, 8, 7, 8, 10, 5, 6, 8, 7, 7, 9, 10, 8, 7, 9, 9, 8, 9, 8, 7, 9, 9, 10, 9, 7], "F", "0.16", "201", "971"],
["JH823265_427_13603_14145_R", 5, 192, [10, 9, 9, 7, 9, 8, 9, 9, 8, 9, 9, 10, 9, 10, 9, 8, 9, 8, 10], "F", "0.12", "201", "392"],
["JH823265_714_52204_52749", 5, 153, [7, 9, 8, 10, 10, 8, 8, 9, 10, 8, 8, 10, 8, 10, 8], "F", "0.13", "204", "357"],
["JH823265_1055_1677_2219", 9, 252, [9, 9, 9, 10, 9, 9, 9, 9, 8, 10, 10, 8, 8, 9, 7, 8, 5, 10, 9, 8, 9, 9, 8, 10, 8], "F", "0.12", "205", "452"],
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