From 6390ad0ede3d1b5115aea44021dedd12e72fcfc8 Mon Sep 17 00:00:00 2001 From: ljyanesm Date: Tue, 1 Jun 2021 12:14:16 +0100 Subject: [PATCH] Fixes #5 --- .../subworkflows/portcullis/wf_portcullis.wdl | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/annotation/transcriptome_module/subworkflows/portcullis/wf_portcullis.wdl b/annotation/transcriptome_module/subworkflows/portcullis/wf_portcullis.wdl index c37d719..1d7354a 100644 --- a/annotation/transcriptome_module/subworkflows/portcullis/wf_portcullis.wdl +++ b/annotation/transcriptome_module/subworkflows/portcullis/wf_portcullis.wdl @@ -53,7 +53,7 @@ workflow portcullis { } } Array[File] def_grouped_pass = groupedFull.pass_tab - Array[File] def_grouped_fail = groupedFull.pass_tab + Array[File] def_grouped_fail = groupedFull.fail_tab } if (!defined(group_to_samples)) { @@ -67,7 +67,7 @@ workflow portcullis { } } Array[File] def_ungrouped_pass = Full.pass_tab - Array[File] def_ungrouped_fail = Full.pass_tab + Array[File] def_ungrouped_fail = Full.fail_tab } Array[File] to_merge_pass = select_first([def_grouped_pass, def_ungrouped_pass])