From 116161f9b9b71eee75338e5e1d2220ba74772afb Mon Sep 17 00:00:00 2001 From: chriswyatt1 Date: Fri, 25 Oct 2024 18:40:38 +0000 Subject: [PATCH] add pandas to chopgo --- .github/workflows/push-chopgo.yml | 2 +- chopgo/Dockerfile | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/push-chopgo.yml b/.github/workflows/push-chopgo.yml index 8b33eab..dc51083 100755 --- a/.github/workflows/push-chopgo.yml +++ b/.github/workflows/push-chopgo.yml @@ -6,7 +6,7 @@ on: #When updating images change image tag below to correspond to changes env: IMAGE_NAME: chopgo - IMAGE_TAG: r-4.3.2_python-3_perl-5.38 + IMAGE_TAG: r-4.3.2_python-3.10_perl-5.38_pandas jobs: build: diff --git a/chopgo/Dockerfile b/chopgo/Dockerfile index 65de792..23eb087 100644 --- a/chopgo/Dockerfile +++ b/chopgo/Dockerfile @@ -1,7 +1,7 @@ FROM rocker/r-base:4.3.1 RUN apt-get update && \ - apt-get install -y python3 wget procps libcurl4-openssl-dev libssl-dev perl && \ + apt-get install -y python3 python3-pip python3-pandas wget procps libcurl4-openssl-dev libssl-dev perl && \ apt-get clean -y && rm -rf /var/lib/apt/lists/* RUN Rscript -e "install.packages(c('BiocManager', 'devtools', 'dplyr', 'tidyr','readxl', 'writexls', 'plyr', 'gdata', 'pheatmap', 'ashr', 'ggplot2', 'ggstar', 'scatterpie', 'scales'))"