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Add validation step at the end of the Run processing #209

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tcezard opened this issue Dec 6, 2016 · 1 comment
Open

Add validation step at the end of the Run processing #209

tcezard opened this issue Dec 6, 2016 · 1 comment

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@tcezard
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tcezard commented Dec 6, 2016

We need to make sure the data generated by the Run process is valid.
We can run something as simple as gzip -t or validate the fastq format with FastqValidator or validate the number of reads by making sure we have exactly the number of reads that are expected using

  • number of reads Conversion file
  • number of reads removed in the Adapter filtering
  • number of reads remove in fastqfilterer steps
@tcezard
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tcezard commented Dec 16, 2016

A first validation step was added in #210 that check gzip validity

@mwhamgenomics mwhamgenomics modified the milestone: v0.14 Mar 8, 2017
@mwhamgenomics mwhamgenomics self-assigned this Mar 24, 2017
@tcezard tcezard modified the milestones: v0.15, v0.14 Apr 20, 2017
@tcezard tcezard modified the milestones: v0.16, v0.15 May 15, 2017
@tcezard tcezard changed the title Add validation step at the end of the Run procesing Add validation step at the end of the Run processing Jun 14, 2017
@mwhamgenomics mwhamgenomics removed their assignment Jan 9, 2018
@tcezard tcezard removed this from the v0.16 milestone Jan 15, 2018
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