From b31d5f87910b3f21ae161bc7327dfa7d145d0f37 Mon Sep 17 00:00:00 2001 From: Nidhi Date: Tue, 7 Jan 2025 12:13:58 -0800 Subject: [PATCH] update pip version comparative-annotation-toolkit dockerfile --- comparative-annotation-toolkit/2.2.1/Dockerfile | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/comparative-annotation-toolkit/2.2.1/Dockerfile b/comparative-annotation-toolkit/2.2.1/Dockerfile index d903ca9..db1aed7 100644 --- a/comparative-annotation-toolkit/2.2.1/Dockerfile +++ b/comparative-annotation-toolkit/2.2.1/Dockerfile @@ -64,9 +64,15 @@ RUN tar xvjf sambamba_v0.6.7_linux.tar.bz2 FROM ubuntu:18.04 RUN apt-get update RUN apt-get install -y wget bedtools bamtools samtools sqlite3 libgsl0-dev libcolamd2 software-properties-common libcurl4-openssl-dev exonerate -RUN add-apt-repository -y ppa:deadsnakes/ppa -RUN apt-get install -y python3.7 pip3 -RUN python3.7 -m pip3 install --upgrade pip3 #added +#RUN add-apt-repository -y ppa:deadsnakes/ppa +RUN add-apt-repository -y ppa:deadsnakes/ppa && apt-get update + +RUN apt-get install -y python3.7 python3.7-distutils +RUN python3.7 -m ensurepip --upgrade +RUN python3.7 -m pip install --upgrade pip + +#RUN apt-get install -y python3.7 pip install --upgrade pip +#RUN python3.7 -m pip3 install --upgrade pip3 #added # Kent RUN for i in wigToBigWig faToTwoBit gff3ToGenePred genePredToBed genePredToFakePsl bamToPsl transMapPslToGenePred \ pslPosTarget axtChain chainMergeSort pslMap pslRecalcMatch pslMapPostChain gtfToGenePred genePredToGtf bedtools \