pyproject.toml

[build-system]
requires = ['setuptools>=61', 'setuptools-scm[toml]>=6.2']
build-backend = 'setuptools.build_meta'

[project]
name = 'gene_program_evaluation'
dynamic = ['version']
description = 'Evaluation framework for gene programs inferred from single-cell omics data'
readme = 'README.md'
requires-python = '>=3.8'
#license = {file = 'LICENSE'}
classifiers = [
    'Development Status :: 1 - Planning',
    'Intended Audience :: Developers',
    'Intended Audience :: Science/Research',
    'Natural Language :: English',
    'Operating System :: POSIX :: Linux',
    'Programming Language :: Python :: 3',
    'Programming Language :: Python :: 3.8',
    'Programming Language :: Python :: 3.9',
    'Programming Language :: Python :: 3.10',
    'Programming Language :: Python :: 3.11',
    'Topic :: Scientific/Engineering :: Bio-Informatics',
]
keywords = [
    'single-cell',
    'bio-informatics',
    'gene-programs',
    'evaluation'
]
authors = [
    {name = 'Revant Gupta'},
]
maintainers = [
    {name = 'Revant Gupta', email = 'revant.gupta.93@gmail.com'}
]


dependencies = [
    'mudata',
    'joblib',
    'tqdm',
    'scipy',
    'numpy',
    'pandas',
    'scikit-learn', # Optional
    'scikit-posthocs', # Optional
    'seaborn',
    'gseapy', # Optional
    'lxml' # Optional
    #'tangermeme' # Optional
    `dash` # Optional
    `dash-bootstrap-components` # Optional
    #`google-cloud-bigquery` # Optional
    `plotly` # Optional -- for interactive plots
    #`db_dtypes` # Optional -- for BigQuery
    `ipywidgets`
    `pyyaml` # Optional -- for Dash app
]