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error in fur: efopen #11

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KarthikStrange opened this issue Jul 24, 2023 · 2 comments
Open

error in fur: efopen #11

KarthikStrange opened this issue Jul 24, 2023 · 2 comments

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@KarthikStrange
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i am facing this error while running fur, no clue where i did wrong.

Step Sequences Nucleotides Mutations (N)

-------------------------------------------------------------

Sliding window 0 0 0

error in fur: efopen, can't open /home/mrstrange/SSPD1/furDb/p.fasta.
@KarthikStrange
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makeFurDb -t /home/mrstrange/SSPD1/target/ -n /home/mrstrange/SSPD1/neighbour/ -d /home/mrstrange/SSPD1/furDb

Reading data...done.

Making macle index with target representative "/home/mrstrange/SSPD1/target/MK760666.1.fasta"...done.

Making BLAST database...done. make furDb executed properly

@haubold
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haubold commented Jul 24, 2023

In your analysis there is no output from the sliding window step. So the next step fails. It should perhaps fail more gracefully, but there we are.

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@haubold @KarthikStrange