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main.yml
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name: CI
# Controls when the action will run.
on:
pull_request:
branches: [master]
workflow_dispatch:
jobs:
linting:
name: "Flint"
runs-on: ubuntu-20.04
steps:
- name: Setup env.
run: |
sudo apt-get update && sudo apt-get install -yq python3-dev python3-pip python3-tk
pip install nobvisual==0.2.0 flinter==0.4.0
- name: Checkout
uses: actions/checkout@v3
with:
fetch-depth: 1
- name: Lint
run: |
flint score src/ -d 10 -r flinter_rc.yml | tee flint.txt
score=$(awk '$1==0{print $3}' flint.txt)
if (( $(echo "$score < 8.13" |bc -l) )) ; then
exit 1
fi
- name: Archive linter report
uses: actions/upload-artifact@v3
with:
name: flint-report
path: flint.txt
retention-days: 5
GNU:
needs: linting
runs-on: ${{matrix.os}}
strategy:
fail-fast: true
matrix:
os: [ubuntu-20.04, macos-13]
compiler: [gfortran-10, gfortran-11, gfortran-12]
backend: [cpu, cuda, hip, opencl]
precision: [sp, dp]
exclude:
- os: ubuntu-20.04
compiler: gfortran-11
- os: ubuntu-20.04
compiler: gfortran-12
- os: ubuntu-20.04
backend: opencl
- os: macos-13
compiler: gfortran-10
- os: macos-13
backend: cuda
- os: macos-13
backend: hip
include:
- os: ubuntu-20.04
setup-env: |
sudo apt-get update && sudo apt-get install -y openmpi-bin libopenmpi-dev autoconf automake autotools-dev libopenblas-dev make git m4 python3 cmake-curses-gui
- os: macos-13
setup-env: brew install openmpi && brew install automake && brew install gcc@11 && brew install gcc@12
env:
FC: ${{ matrix.compiler }}
OMPI_FC: ${{ matrix.compiler }}
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
OMPI_MCA_btl_vader_single_copy_mechanism: none
RP: ${{ matrix.precision }}
name: ${{ matrix.os }} / ${{ matrix.compiler }} / ${{ matrix.backend }} / ${{ matrix.precision }}
steps:
- name: Setup env.
run: ${{ matrix.setup-env }}
- name: Cache pFUnit
id: cache-pfunit
uses: actions/cache@v3
with:
path: ~/pkg/pfunit
key: pfunit-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }}
- name: Build pFUnit
if: ${{ (steps.cache-pfunit.outputs.cache-hit != 'true') && (matrix.backend == 'cpu') }}
run: |
git clone --depth 1 https://github.com/Goddard-Fortran-Ecosystem/pFUnit.git -b v4.4.2
cd pFUnit
cat >> pfunit_error_stop.patch << _ACEOF
diff --git a/src/funit/FUnit.F90 b/src/funit/FUnit.F90
index 7df7b65..4f7dbf5 100644
--- a/src/funit/FUnit.F90
+++ b/src/funit/FUnit.F90
@@ -168,7 +168,7 @@ contains
#if defined(PGI)
call exit(-1)
#else
- stop '*** Encountered 1 or more failures/errors during testing. ***'
+ error stop '*** Encountered 1 or more failures/errors during testing. ***'
#endif
end if
_ACEOF
git apply pfunit_error_stop.patch && mkdir b && cd b
cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/pfunit ..
make -j$(nproc) && make install && cd ../../
- name: Cache json-fortran
id: cache-json-fortran
uses: actions/cache@v3
with:
path: ~/pkg/json-fortran
key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }}
- name: Install json-fortran
if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }}
run: |
git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/
cd json-fortran
mkdir build && cd build
cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON ..
make -j$(nproc) && make install && cd ../../
rm -f ${HOME}/pkg/json-fortran/lib/*.dylib
- name: Setup json-fortran
run: |
echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV
- name: Checkout
uses: actions/checkout@v3
with:
fetch-depth: 1
- name: Build (CPU backend)
if: matrix.backend == 'cpu'
run: |
echo $PKG_CONFIG_PATH
./regen.sh
./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" --with-pfunit=${HOME}/pkg/pfunit/PFUNIT-4.4 --enable-real=${RP}
make -j$(nproc)
- name: Build (CUDA backend)
if: matrix.backend == 'cuda'
run: |
sudo apt-get install -y nvidia-cuda-toolkit
./regen.sh
./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" --enable-real=${RP} --with-cuda=/usr
make -j$(nproc)
- name: Build (HIP backend)
if: matrix.backend == 'HIP'
run: |
wget -q -O - https://repo.radeon.com/rocm/rocm.gpg.key | sudo apt-key add -
echo 'deb [arch=amd64] https://repo.radeon.com/rocm/apt/debian/ ubuntu main' | sudo tee /etc/apt/sources.list.d/rocm.list
sudo apt-get update && sudo apt-get install -y rocm-dev
./regen.sh
./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" HIP_HIPCC_FLAGS="-O2 -fPIE" --enable-real=${RP} --with-hip=/opt/rocm-6.0.0/
make -j$(nproc)
- name: Build (OpenCL backend)
if: matrix.backend == 'opencl'
run: |
./regen.sh
./configure FC=${FC} FCFLAGS="-O2 -pedantic -std=f2008" --enable-real=${RP} --with-opencl
make -j$(nproc)
- name: Check
if: matrix.backend == 'cpu'
run: |
ls ${HOME}/pkg/json-fortran/lib/
make -j$(nproc) check
- name: Archive test report
if: matrix.backend == 'cpu' && failure()
uses: actions/upload-artifact@v2
with:
name: Test report_${{ matrix.os }}_${{ matrix.compiler }}
path: tests/test-suite.log
retention-days: 2
- name: Dist (CPU backend)
if: matrix.backend == 'cpu'
run: |
make dist
mkdir releng
tar xf neko-*.tar.gz -C releng
cd releng/neko-*
./configure FC=${FC} --enable-real=${RP}
make -j $(nproc)
- name: Dist (CUDA backend)
if: matrix.backend == 'cuda'
run: |
make dist
mkdir releng
tar xf neko-*.tar.gz -C releng
cd releng/neko-*
./configure FC=${FC} --enable-real=${RP} --with-cuda=/usr
make -j $(nproc)
- name: Dist (HIP backend)
if: matrix.backend == 'hip'
run: |
make dist
mkdir releng
tar xf neko-*.tar.gz -C releng
cd releng/neko-*
./configure FC=${FC} FCFLAGS="-fPIE" --enable-real=${RP} HIP_HIPCC_FLAGS="-O2 -fPIE" --with-hip=/opt/rocm-6.0.0
make -j $(nproc)
- name: Dist (OpenCL backend)
if: matrix.backend == 'opencl'
run: |
make dist
mkdir releng
tar xf neko-*.tar.gz -C releng
cd releng/neko-*
./configure FC=${FC} --enable-real=${RP} --with-opencl
make -j $(nproc)
Intel:
needs: linting
runs-on: ${{matrix.os}}
strategy:
fail-fast: false
matrix:
os: [ubuntu-20.04]
compiler: [ifort, ifx]
precision: [sp, dp]
backend: [cpu]
include:
- os: ubuntu-20.04
setup-env: |
wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null && echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list && sudo apt-get update -y && sudo apt install -y --no-install-recommends intel-oneapi-compiler-fortran intel-oneapi-mpi intel-oneapi-mpi-devel intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic
source /opt/intel/oneapi/setvars.sh
sudo apt install -y autoconf automake autotools-dev libopenblas-dev make git m4 python3 ca-certificates cmake
export PATH=/opt/intel/oneapi/compiler/2024.0/bin:${PATH}
printenv >> $GITHUB_ENV
env:
CC: icc
FC: ${{ matrix.compiler }}
RP: ${{ matrix.precision }}
name: ${{ matrix.os }} / ${{ matrix.compiler }} / ${{ matrix.backend }} / ${{ matrix.precision }}
steps:
- name: Setup env.
run: ${{ matrix.setup-env }}
- name: Cache json-fortran
id: cache-json-fortran
uses: actions/cache@v3
with:
path: ~/pkg/json-fortran
key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }}
- name: Install json-fortran
if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }}
run: |
git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/
cd json-fortran
mkdir build && cd build
env FC=${FC} cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON ..
make -j$(nproc) && make install && cd ../../
cat ${HOME}/pkg/json-fortran/lib/pkgconfig/json-fortran.pc
- name: Setup json-fortran
run: |
echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV
- name: Checkout
uses: actions/checkout@v3
with:
fetch-depth: 1
- name: Build
run: |
echo $PKG_CONFIG_PATH
./regen.sh
./configure FC=${FC} CC=${CC} MPIFC"=mpiifort -fc=${FC}" --enable-real=${RP}
make FCFLAGS="-O2 -stand f08 -warn errors `pkg-config --cflags json-fortran`" -j$(nproc)
NVIDIA:
needs: linting
runs-on: ${{matrix.os}}
strategy:
fail-fast: true
matrix:
os: [ubuntu-20.04]
compiler: [nvfortran]
backend: [cpu, cuda]
precision: [dp]
include:
- os: ubuntu-20.04
setup-env: sudo apt-get update && sudo apt-get install -y autoconf automake autotools-dev make git m4 libopenblas-dev && curl https://developer.download.nvidia.com/hpc-sdk/ubuntu/DEB-GPG-KEY-NVIDIA-HPC-SDK | sudo gpg --dearmor -o /usr/share/keyrings/nvidia-hpcsdk-archive-keyring.gpg && echo 'deb [signed-by=/usr/share/keyrings/nvidia-hpcsdk-archive-keyring.gpg] https://developer.download.nvidia.com/hpc-sdk/ubuntu/amd64 /' | sudo tee /etc/apt/sources.list.d/nvhpc.list && sudo apt-get update -y && sudo apt-get install -y nvhpc-23-7 && NVARCH=`uname -s`_`uname -m`; export NVARCH && NVCOMPILERS=/opt/nvidia/hpc_sdk; export NVCOMPILERS && PATH=$NVCOMPILERS/$NVARCH/23.7/compilers/bin:$PATH; export PATH && export PATH=$NVCOMPILERS/$NVARCH/23.7/comm_libs/mpi/bin:$PATH && printenv >> $GITHUB_ENV
env:
CC: gcc
FC: ${{ matrix.compiler }}
OMPI_FC: ${{ matrix.compiler }}
OMPI_CC: gcc
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
OMPI_MCA_btl_vader_single_copy_mechanism: none
RP: ${{ matrix.precision }}
name: ${{ matrix.os }} / ${{ matrix.compiler }} / ${{ matrix.backend }} / ${{ matrix.precision }}
steps:
- name: Setup env.
run: ${{ matrix.setup-env }}
- name: Cache json-fortran
id: cache-json-fortran
uses: actions/cache@v3
with:
path: ~/pkg/json-fortran
key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }}
- name: Install json-fortran
if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }}
run: |
git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/
cd json-fortran
mkdir build && cd build
cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON ..
make -j$(nproc) && make install && cd ../../
cat ${HOME}/pkg/json-fortran/lib/pkgconfig/json-fortran.pc
- name: Setup json-fortran
run: |
echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV
- name: Checkout
uses: actions/checkout@v3
with:
fetch-depth: 1
- name: Build (CPU backend)
if: matrix.backend == 'cpu'
run: |
git apply patches/nvhpc_bge.patch
./regen.sh
./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP}
make
- name: Build (CUDA backend)
if: matrix.backend == 'cuda'
run: |
git apply patches/nvhpc_bge.patch
./regen.sh
./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} --with-cuda=/opt/nvidia/hpc_sdk/Linux_x86_64/23.7/cuda/
make
ReFrame:
needs: GNU
runs-on: ubuntu-20.04
strategy:
fail-fast: true
matrix:
precision: [sp, dp]
compiler: [gfortran-10]
env:
FC: ${{ matrix.compiler }}
OMPI_FC: ${{ matrix.compiler}}
OMPI_ALLOW_RUN_AS_ROOT: 1
OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1
OMPI_MCA_btl_vader_single_copy_mechanism: none
RP: ${{ matrix.precision }}
name: ReFrame / ${{ matrix.compiler}} / ${{ matrix.precision }}
steps:
- name: Setup env.
run: |
sudo apt-get update && sudo apt-get install -y openmpi-bin libopenmpi-dev autoconf automake autotools-dev libopenblas-dev make git m4 python3
pip install reframe-hpc
- name: Cache json-fortran
id: cache-json-fortran
uses: actions/cache@v3
with:
path: ~/pkg/json-fortran
key: json-fortran-${{ runner.os }}-${{ matrix.os }}-${{ matrix.compiler }}
- name: Install json-fortran
if: ${{ (steps.cache-json-fortran.outputs.cache-hit != 'true') }}
run: |
git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/
cd json-fortran
mkdir build && cd build
cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON ..
make -j$(nproc) && make install && cd ../../
cat ${HOME}/pkg/json-fortran/lib/pkgconfig/json-fortran.pc
- name: Setup json-fortran
run: |
echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV
- name: Topology
run: |
reframe --detect-host-topology
- name: Checkout
uses: actions/checkout@v3
with:
fetch-depth: 1
- name: Regression tests
run: |
./regen.sh
cd reframe
env NEKO_REAL=${RP} NEKO_SCHEME=pnpn reframe -v -C settings.py -c checks.py -n MiniHemi -n MiniTgv8 -n MiniRB -r --performance-report --system github-actions:cpu
documentation:
needs: [Intel, GNU, NVIDIA, ReFrame]
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Setup env.
run: |
sudo apt-get update && sudo apt-get install -y git openmpi-bin libopenmpi-dev autoconf automake autotools-dev libopenblas-dev make git m4 python3 doxygen fonts-freefont-ttf graphviz
git clone https://github.com/ExtremeFLOW/doxygen-awesome-css doc/doxygen-awesome-css
git clone --depth 1 https://github.com/ExtremeFLOW/json-fortran/
cd json-fortran
mkdir build && cd build
cmake -DCMAKE_INSTALL_PREFIX=${HOME}/pkg/json-fortran -DUSE_GNU_INSTALL_CONVENTION=ON ..
make -j$(nproc) && make install && cd ../../
echo "PKG_CONFIG_PATH=${PKG_CONFIG_PATH}:${HOME}/pkg/json-fortran/lib/pkgconfig/" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HOME}/pkg/json-fortran/lib/" >> $GITHUB_ENV
- name: Doxygen
run: |
./regen.sh
./configure FC=${FC}
make html
# Deploy the HTML documentation to GitHub Pages
- name: GH Pages Deployment
uses: peaceiris/actions-gh-pages@v3
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: ./doc/html/
allow_empty_commit: false
force_orphan: false
publish_branch: gh-pages
destination_dir: docs
keep_files: false
enable_jekyll: true