diff --git a/package.json b/package.json index 0876190230..53ad02a6bb 100644 --- a/package.json +++ b/package.json @@ -1,7 +1,7 @@ { "name": "@gmod/jbrowse", "main": "browser/main.js", - "version": "1.16.2-alpha.0", + "version": "1.16.2", "description": "JBrowse - client-side genome browser", "repository": "https://github.com/GMOD/jbrowse.git", "scripts": { diff --git a/release-notes.md b/release-notes.md index 09d6d06619..0856b4478c 100644 --- a/release-notes.md +++ b/release-notes.md @@ -1,4 +1,4 @@ -{{$NEXT}} +# Release 1.16.2 2019-02-01 03:31:36 UTC ## Minor improvements diff --git a/src/JBrowse/package.json b/src/JBrowse/package.json index 56de67e70d..ca3c878e86 100644 --- a/src/JBrowse/package.json +++ b/src/JBrowse/package.json @@ -1,6 +1,6 @@ { "name": "JBrowse", - "version": "1.16.2-alpha.0", + "version": "1.16.2", "copyright":"© 2007-2017 The Evolutionary Software Foundation", "main": "main", "dependencies": { diff --git a/website/blog/2019-01-31-jbrowse-1-16-2.md b/website/blog/2019-01-31-jbrowse-1-16-2.md new file mode 100644 index 0000000000..eb48a82d6b --- /dev/null +++ b/website/blog/2019-01-31-jbrowse-1-16-2.md @@ -0,0 +1,45 @@ +--- +layout: post +title: JBrowse 1.16.2 maintenance release +date: 2019-01-31 +tags: ["News","Software releases"] +--- + +I'm happy to announce the release of 1.16.2, it is a smaller maintenance release. It contains several fixes including for CSI in BAM files, +and several other small fixes. Thanks to everyone for communicating requests and bug reports + +* [JBrowse-1.16.2.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.2-release/JBrowse-1.16.2.zip) - minified release +* [JBrowse-1.16.2-dev.zip](https://github.com/GMOD/jbrowse/archive/1.16.2-release.zip) - use this if you modify jbrowse source code or use plugins +* [JBrowse-1.16.2-desktop-win32-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.2-release/JBrowse-1.16.2-desktop-win32-x64.zip) +* [JBrowse-1.16.2-desktop-linux-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.2-release/JBrowse-1.16.2-desktop-linux-x64.zip) +* [JBrowse-1.16.2-desktop-darwin-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.2-release/JBrowse-1.16.2-desktop-darwin-x64.zip) + + + + +## Minor improvements + + * Allow configuring the cache busting behavior for adding random ?v= value + to config file requests. This can be configured in index.html. Thanks to + user @sandilyaamit for reporting, this is actually important to disable + when using Amazon presigned URLs (@cmdcolin) + + * Adds `fixBounds` config for XYPlot tracks which can be set to false to + disable the behavior of rounding up or down on the min_score/max_score + variables for the ruler. Thanks to @scottcain for the suggestion + (issue #1306, @cmdcolin) + +## Bug fixes + + * Fix ability to use CSI indexes with BAM files since 1.16.0 (@cmdcolin) + + * Fix ability to read some CRAM files with unmapped mates (@cmdcolin) + + * Fix issue with the browser loading NaN locations on startup (@cmdcolin) + + * Add fix for exporting GFF3 for newer browsers that have Array.values() + enabled. Thanks to Scott Cain for reporting (@cmdcolin) + + * Improve error message when refSeqs=file.fai config fails to load + (@cmdcolin) + diff --git a/website/siteConfig.js b/website/siteConfig.js index dcd5bf7a02..034f63896a 100644 --- a/website/siteConfig.js +++ b/website/siteConfig.js @@ -27,7 +27,7 @@ const createVariableInjectionPlugin = variables => { }; const v = { - "version": "1.16.1" + "version": "1.16.2" }; const siteVariables = { "version": v.version,