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Samtools 1.7 error - libcrypto.so.1.0.0 #9

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fa2k opened this issue May 9, 2023 · 0 comments
Open

Samtools 1.7 error - libcrypto.so.1.0.0 #9

fa2k opened this issue May 9, 2023 · 0 comments

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@fa2k
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fa2k commented May 9, 2023

When running on some Debian-based Linux systems, it's not possible to run samtools 1.7.

samtools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory

Samtools is used by SENSV, so the analysis fails.

One solution is to use samtools 1.9 or newer. Link to bioconda issue with information about this: bioconda/bioconda-recipes#13958

I got around it by overriding to use samtools=1.9 and htslib=1.9 in the step-by-step build (Dockerfile here https://github.com/fa2k/dockerfiles/blob/main/SENSV/Dockerfile)
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@fa2k