Carrot Transform automates data transformation processes and facilitates the standardisation of datasets to the OMOP vocabulary, simplifying the integration of diverse data sources.
Carrot Mapper is a webapp which allows the user to use the metadata (as output by WhiteRabbit) from a dataset to produce mapping rules to the OMOP standard, in the JSON format. These can be ingested by Carrot Transform to perform the mapping of the contents of the dataset to OMOP.
Carrot Transform transforms input data into tab separated variable files of standard OMOP tables, with concepts mapped according to the provided rules (generated from Carrot Mapper).
To have the project up and running, please follow the Quick Start Guide.
This repository's source code is available under the MIT license.