Home
Scipion is an image processing framework for obtaining 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents a unified interface for both biologists and developers. Scipion allows you to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Read the full project definition.
-
Getting Started: A quick introduction to Scipion and a guide to other topics.
-
How to install Scipion: Step-by-step guide to a full installation.
-
Integrated Packages and Protocols: Check the current list of packages integrated and the protocols from each of them.
-
Users Page: introductory resources that assume a basic knowledge of electron microscopy. Current tutorials include: (1) Introduction to SPA in Scipion using BPV data, (2) Initial volume estimation with several methods: RCT, Ransac, Eman
-
Developers Page: Has information about software tools provided by the Scipion framework. This section can be useful even for a non-programmer experimentalist.
-
Scipion Web Tools refers to a subset of workflows implemented in Scipion and accessed through a webpage. These tools provide a good way to try the different processing workflows without any local installation.