error creating multi gene display for specific dataset

[carlocolantuoni]

hi guys,

i dont make many multi-gene displays, so i dont know if this is a general problem or specific to this dataset, but it appears i cant make any multigene displays for this dataset without getting errors (this is being done under user "Alexandre Jourdon").

i get "Could not create plot for this dataset and parameters. Please contact the gEAR team." when i hit the "plot" button.

i have tried many different variations with different metadata etc, bt alwasy get the same error with no display coming up.

https://nemoanalytics.org/multigene_curator.html?dataset_id=b3816674-c644-4eb9-843a-e9cce381e937

[adkinsrs]

Taking a look at this today

[adkinsrs]

@carlocolantuoni, how long ago was this command attempted? The error logs (going back to Jan 10) do not have anything related to the particular API call, so this was either run before then or it is a Javascript error. If it's a Javascript error, I cannot replicate as the dataset is private and clicking the link does not give me access to the dataset. My first inclination, though, is that maybe one of the Seurat variable names with a dot was not escaped in the javascript code.

[carlocolantuoni]

i did this all jan 22

i tried again just now and got no error ,but it didnt progress to the plot page this time, just eternally (waited 5 min or so) spinning when i hit the plot button

[adkinsrs]

Sounds to me that it is a Javascript issue.

Can you right click the page, and click Inspect at the bottom of the dropdown. This should bring up a developer console with various tabs. Next, click the "console" tab, and send a screenshot of the results. This should help me figure out where the javascript error is. If possible, if you see text in a red background, you can click the side arrow to the far left of the text to bring up a stacktrace.

[adkinsrs]

Alternative, what happens if you attempt to create the plot with none of the clusterbar groups selected? This may help me identify if I did not escape those group names.

[carlocolantuoni]

with no clusterbar groups seleceted im getting what i got in the 1st error report in this ticket:

[carlocolantuoni]

here's what i see when i "inspect" the page (sing original settings with clsterbar for this):

[carlocolantuoni]

and with some of those red text arrows expanded:

[carlocolantuoni]

any of that helpful? sorry got go for now, but will check back tomoro

[adkinsrs]

So I think you missed a step. After you bring up the Inspect window (which show the HTML as you screenshotted), there are tabs at the top of the pane. One of them is "console", and clicking that should bring up any potential Javascript errors. There should also be a sideways triangle to the left of the text in the red box that you can expand to bring up the stack trace information (to get to the right lines of code).

At least we eliminated escaping clusterbar group names as the potential culprit. If this is all too complicated, you could just give me this set of user credentials, so that I may be able to see the dataset and debug myself.