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locus_summary.py output #41

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cmccabe0728 opened this issue Jul 18, 2024 · 0 comments
Open

locus_summary.py output #41

cmccabe0728 opened this issue Jul 18, 2024 · 0 comments

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@cmccabe0728
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cmccabe0728 commented Jul 18, 2024

Hello,

In locus_summary.py the same loci appear multiple times... an example is ilmnseq_rs17161788_ilmnrev which appeared 157991 times and appears to have the same numbers in it and be the same id.... my question is can they be combined or is there a specific reason they are separate? Is there a flag in the command to combine? Thank you :).

1913847,ilmnseq_rs17161788_ilmnrev,42670520,0,3,1.0,1.0,0.0,0.0,0.0,0.9095823,0.5191443562507629,0.51914436,0.0,1.0,1.0,0.016982518,0.010131218,0.49620354,0.02236068,0.9754246,0.02236068,1.1053641,0.12743507,1.361561,0.15364371,1.0681909,0.1,-
1913847,ilmnseq_rs17161788_ilmnrev,42670520,0,3,1.0,1.0,0.0,0.0,0.0,0.9095823,0.5191443562507629,0.51914436,0.0,1.0,1.0,0.016982518,0.010131218,0.49620354,0.02236068,0.9754246,0.02236068,1.1053641,0.12743507,1.361561,0.15364371,1.0681909,0.1,-
1913847,ilmnseq_rs17161788_ilmnrev,42670520,0,3,1.0,1.0,0.0,0.0,0.0,0.9095823,0.5191443562507629,0.51914436,0.0,1.0,1.0,0.016982518,0.010131218,0.49620354,0.02236068,0.9754246,0.02236068,1.1053641,0.12743507,1.361561,0.15364371,1.0681909,0.1,
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