diff --git a/minimap2.1 b/minimap2.1 index 879ef441..0cdf6d8a 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -274,6 +274,10 @@ Only map to the reverse complement strand of the reference sequences. .BR --heap-sort = no | yes If yes, sort anchors with heap merge, instead of radix sort. Heap merge is faster for short reads, but slower for long reads. [no] +.TP +.B --no-pairing +Treat two reads in a pair as independent reads. The mate related fields in SAM +are still properly populated. .SS Alignment options .TP 10 .BI -A \ INT