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DESCRIPTION
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Package: toolStability
Type: Package
Title: Tool for Stability Indices Calculation
Version: 0.1.2
Authors@R: c(person('Tien-Cheng','Wang', email ='[email protected]',
role=c('aut','cre')),person('Tsu-Wei','Chen',email='[email protected]',role='com'))
Author: Tien-Cheng Wang [aut, cre],
Tsu-Wei Chen [com]
Maintainer: Tien-Cheng Wang <[email protected]>
Description: Tools to calculate stability indices with parametric,
non-parametric and probabilistic approaches. The basic data format requirement for 'toolStability' is a data frame with 3 columns including numeric trait values, genotype,and environmental labels. Output format of each function is the dataframe with chosen stability index for each genotype.
Function "table_stability" offers the summary table of all stability indices in this package.
This R package toolStability is part of the main publication:
Wang, Casadebaig and Chen (2023) <doi:10.1007/s00122-023-04264-7>.
Analysis pipeline for main publication can be found on github: <https://github.com/Illustratien/Wang_2023_TAAG/tree/V1.0.0>.
Sample dataset in this package is derived from another publication:
Casadebaig P, Zheng B, Chapman S et al. (2016) <doi:10.1371/journal.pone.0146385>.
For detailed documentation of dataset, please see on Zenodo <doi:10.5281/zenodo.4729636>.
Indices used in this package are from:
Döring TF, Reckling M (2018) <doi:10.1016/j.eja.2018.06.007>.
Eberhart SA, Russell WA (1966) <doi:10.2135/cropsci1966.0011183X000600010011x>.
Eskridge KM (1990) <doi:10.2135/cropsci1990.0011183X003000020025x>.
Finlay KW, Wilkinson GN (1963) <doi:10.1071/AR9630742>.
Hanson WD (1970) Genotypic stability. <doi:10.1007/BF00285245>.
Lin CS, Binns MR (1988) <https://cdnsciencepub.com/doi/abs/10.4141/cjps88-018>.
Nassar R, Hühn M (1987).
Pinthus MJ (1973) <doi:10.1007/BF00021563>.
Römer T (1917).
Shukla GK (1972).
Wricke G (1962).
Depends: R (>= 3.5.0)
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Imports:
dplyr,
data.table,
Rdpack,
nortest,
stats
Suggests:
testthat (>= 3.0.0),
ggplot2,
knitr,
rmarkdown,
pkgdown,
pander,
XML,
httr,
RCurl,
covr
RdMacros:
Rdpack
URL:
https://illustratien.github.io/toolStability/,
https://link.springer.com/article/10.1007/s00122-023-04264-7,
https://github.com/Illustratien/toolStability,
https://github.com/Illustratien/Wang_2023_TAAG,
https://doi.org/10.5281/zenodo.4729636
BugReports: https://github.com/Illustratien/toolStability/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
LazyLoad: true
Config/testthat/edition: 3