All notable changes to this project will be documented in this file. The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.
- Import error in mod. base tutorial.
- Plots in medaka demonstration walkthrough.
- VCF depth type-cast in amplicon variant calling tutorial.
- Demultiplexing removed from ARTIC tutorial.
- ARTIC output files placed in correct output location.
- Additional primer sets to ARTIC tutorial.
- Updated modified base to use latest tools and methods.
- Updated SV tutorial to use LRA and cuteSV in line with current best practice.
- SARS-CoV-2 tutorial correctly handles V1200 primer set.
- Additional user guidance in several notebooks.
- Revamped SARS-CoV-2 notebook to be more inline with wf-artic workflow.
- Based on nanolabs v0.4.3.
- Cov2 tutorial updated
- Accompanies nanolabs v0.4.1
- Cas9 tutorial percentage of reads on target infographic updated
- Added Zymo database
- Changed sample file to small sample file