DESCRIPTION

Package: MADDOG
Title: Lineage Designation and Assignment
Version: 0.0.0.9000
Authors@R: 
    person(given = "Kathryn",
           family = "Campbell",
           role = c("aut", "cre"),
           email = "k.campbell.1@research.gla.ac.uk",
           comment = c(ORCID = 0000-0002-5123-0469)
           )
URL: https://github.com/KathrynCampbell/MADDOG_package
BugReports: https://github.com/KathrynCampbell/MADDOG_package/issues
Description: This package assigns viral sequences to pre-existing lineages given
             a reference set, and also allows lineages to be designated given a set of sequences
             (an initial step for classification).
License: use_gpl3_license()
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Imports: seqinr,
         phangorn,
         stringr,
         caper,
         ips,
         adegenet,
         ape,
         dplyr,
         rgdal,
         adephylo,
         rmarkdown,
         knitr, 
         RColorBrewer,
         ggplot2,
         ggtree,
         treeio,
         plotly,
         gridExtra,
         devtools,
         gridExtra,
         castor,
         phytools
Suggests: knitr, rmarkdown
VignetteBuilder: knitr