From 8c31d5817d2bfca40edce764e3b09d5d40070da3 Mon Sep 17 00:00:00 2001
From: Scott Gigante <scottgigante@gmail.com>
Date: Thu, 7 Jun 2018 16:15:40 -0400
Subject: [PATCH 1/2] remove duplicated code

---
 graphtools/graphs.py | 14 +-------------
 1 file changed, 1 insertion(+), 13 deletions(-)

diff --git a/graphtools/graphs.py b/graphtools/graphs.py
index 1eed886..81c0080 100644
--- a/graphtools/graphs.py
+++ b/graphtools/graphs.py
@@ -172,19 +172,7 @@ def build_kernel(self):
             symmetric matrix with ones down the diagonal
             with no non-negative entries.
         """
-        if self.decay is None or self.thresh == 1:
-            # binary connectivity matrix
-            # sklearn has a function for this
-            log_start("KNN search")
-            K = kneighbors_graph(self.knn_tree,
-                                 n_neighbors=self.knn,
-                                 metric=self.distance,
-                                 mode='connectivity',
-                                 include_self=True)
-            log_complete("KNN search")
-        else:
-            # sparse fast alpha decay
-            K = self.build_kernel_to_data(self.data_nu)
+        K = self.build_kernel_to_data(self.data_nu)
         # symmetrize
         K = (K + K.T) / 2
         return K

From b71444de72b5f048d27da7ed5fc750611187814e Mon Sep 17 00:00:00 2001
From: Scott Gigante <scottgigante@gmail.com>
Date: Thu, 7 Jun 2018 16:15:46 -0400
Subject: [PATCH 2/2] fix typo

---
 graphtools/api.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/graphtools/api.py b/graphtools/api.py
index fc9722b..68c236e 100644
--- a/graphtools/api.py
+++ b/graphtools/api.py
@@ -201,7 +201,7 @@ def Graph(data,
     elif len(parent_classes) == 2:
         class Graph(parent_classes[0], parent_classes[1]):
             pass
-    elif len(parent_classes) == 2:
+    elif len(parent_classes) == 3:
         class Graph(parent_classes[0], parent_classes[1], parent_classes[2]):
             pass
     else: