diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
index f33939c..9c9fb53 100644
--- a/.github/workflows/CI.yml
+++ b/.github/workflows/CI.yml
@@ -53,7 +53,8 @@ jobs:
with:
name: my-artifact-${{ matrix.python-version }}
path: .coverage*
- if-no-files-found: ignore
+ if-no-files-found: warn
+ include-hidden-files: true
merge:
name: merge
@@ -65,6 +66,7 @@ jobs:
with:
name: coverage-data
pattern: my-artifact-*
+ include-hidden-files: true
coverage:
name: Combine coverage
diff --git a/README.md b/README.md
index 83f5c68..c63c008 100644
--- a/README.md
+++ b/README.md
@@ -128,9 +128,9 @@ conda env create -f development.yml
conda activate readfish_dev
```
-| ‼️ Important !!
|
-|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
-| MinKNOW is transitioning from Guppy to Dorado. Until MinKNOW version 5.9 both Guppy and Dorado used ont-pyguppy-client-lib.
As of MinKNOW version 5.9 and Dorado server version 7.3.9 and greater Dorado requires an alternate library, `ont-pybasecall-client-lib`.
The listed `ont-pyguppy-client-lib` or `ont-pybasecaller-client-lib` version may not match the version installed on your system. To fix this, Please see this [issue](https://github.com/LooseLab/readfish/issues/221#issuecomment-1381529409), using the appropriate library. |
+| ‼️ Important !!
|
+|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
+| MinKNOW has now transitioned from Guppy to Dorado. Until MinKNOW version 5.9 both Guppy and Dorado used ont-pyguppy-client-lib.
As of MinKNOW version 5.9 and Dorado server version 7.3.9 and greater Dorado required an alternate library, `ont-pybasecall-client-lib`, but guppy could still be used.
As of MinKNOW 6.0 Guppy support has been deprecated and only Dorado support is provided. It is important to ensure the correct library is installed for your specific configuration and the listed `ont-pyguppy-client-lib` or `ont-pybasecaller-client-lib` version may not match the versions installed on your system. To fix this, Please see this [issue](https://github.com/LooseLab/readfish/issues/221#issuecomment-1381529409), using the appropriate library. |
[ONT's Dorado Basecall Server GPU](https://community.nanoporetech.com/downloads) should be installed and running as a server.