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setup.cfg
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# This file is used to configure your project.
# Read more about the various options under:
# http://setuptools.readthedocs.io/en/latest/setuptools.html#configuring-setup-using-setup-cfg-files
[metadata]
name = clinical-evaluation
description = Add a short description here!
author = Suraj Pai
author-email = [email protected]
license = mit
long-description = file: README.rst
long-description-content-type = text/x-rst; charset=UTF-8
url = https://github.com/pyscaffold/pyscaffold/
project-urls =
Documentation = https://pyscaffold.org/
# Change if running only on Windows, Mac or Linux (comma-separated)
platforms = any
# Add here all kinds of additional classifiers as defined under
# https://pypi.python.org/pypi?%3Aaction=list_classifiers
classifiers =
Development Status :: 4 - Beta
Programming Language :: Python
[options]
zip_safe = False
packages = find:
include_package_data = True
package_dir =
=src
# DON'T CHANGE THE FOLLOWING LINE! IT WILL BE UPDATED BY PYSCAFFOLD!
setup_requires = pyscaffold>=3.2a0,<3.3a0
# Add here dependencies of your project (semicolon/line-separated), e.g.
install_requires =
numpy
scipy
scikit-image
SimpleITK
opencv-python
prodict
pydicom
imageio
pandas
notebook
tqdm
imageio-ffmpeg
# The usage of test_requires is discouraged, see `Dependency Management` docs
# tests_require = pytest; pytest-cov
# Require a specific Python version, e.g. Python 2.7 or >= 3.4
# python_requires = >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*
[options.packages.find]
where = src
exclude =
tests
[options.extras_require]
# Add here additional requirements for extra features, to install with:
# `pip install clinical-evaluation[PDF]` like:
# PDF = ReportLab; RXP
# Add here test requirements (semicolon/line-separated)
testing =
pytest
pytest-cov
[options.entry_points]
console_scripts =
deform = clinical_evaluation.deform:run
save_dicom = clinical_evaluation.save_dicom:run
# Add here console scripts like:
# console_scripts =
# script_name = clinical_evaluation.module:function
# For example:
# And any other entry points, for example:
# pyscaffold.cli =
# awesome = pyscaffoldext.awesome.extension:AwesomeExtension
[test]
# py.test options when running `python setup.py test`
# addopts = --verbose
extras = True
[tool:pytest]
# Options for py.test:
# Specify command line options as you would do when invoking py.test directly.
# e.g. --cov-report html (or xml) for html/xml output or --junitxml junit.xml
# in order to write a coverage file that can be read by Jenkins.
addopts =
--cov clinical_evaluation --cov-report term-missing
--verbose
norecursedirs =
dist
build
.tox
testpaths = tests
[aliases]
dists = bdist_wheel
[bdist_wheel]
# Use this option if your package is pure-python
universal = 1
[build_sphinx]
source_dir = docs
build_dir = build/sphinx
[devpi:upload]
# Options for the devpi: PyPI server and packaging tool
# VCS export must be deactivated since we are using setuptools-scm
no-vcs = 1
formats = bdist_wheel
[flake8]
# Some sane defaults for the code style checker flake8
exclude =
.tox
build
dist
.eggs
docs/conf.py
[pyscaffold]
# PyScaffold's parameters when the project was created.
# This will be used when updating. Do not change!
version = 3.2.3
package = clinical_evaluation
[yapf]
based_on_style = google
column_limit = 100
[pylint]
fail-under = 8
[pylint.typecheck]
generated-members=torch.*, cv2.*