diff --git a/appyters/scRNA_seq/setup.R b/appyters/scRNA_seq/setup.R index 229103fa..1e4a5cfa 100644 --- a/appyters/scRNA_seq/setup.R +++ b/appyters/scRNA_seq/setup.R @@ -1,3 +1,5 @@ +install.packages("R.utils") +install.packages("RCurl") install.packages("dplyr") install.packages("tibble") install.packages("Matrix") @@ -10,9 +12,9 @@ install.packages("statmod") if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") +BiocManager::install("DESeq2") BiocManager::install("limma") BiocManager::install("edgeR") -BiocManager::install("DESeq2") install.packages("https://cran.r-project.org/src/contrib/Archive/XML/XML_3.98-1.20.tar.gz")