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Possible to use the 'plot_mass_spectra()' function with DIA-NN? #27

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MarcIsak opened this issue Jun 10, 2022 · 1 comment
Open

Possible to use the 'plot_mass_spectra()' function with DIA-NN? #27

MarcIsak opened this issue Jun 10, 2022 · 1 comment

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@MarcIsak
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Hi,

I am running AlphaViz in Python, and I wonder if there is a way to use the plot_mass_spectra function on a diaPASEF dataset analyzed with DIA-NN? When I read the documentation, it seems like this function is compatible with datasets analyzed by MaxQuant but it would be great if it could also work with DIA-NN.

Best regards,

Marc
@jalew188
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We are currently working on this, check https://github.com/MannLabs/alphaviz/blob/peptdeep_latest/nbs/tutorial_DIANN_alphabase.ipynb

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@jalew188 @MarcIsak