Error from Kilosort 4.0, using Neuropixel 1.0 probe, single column mode

[Haorun-KUL]

Describe the issue:

Traceback (most recent call last):

File "C:\ProgramData\anaconda3\envs\kilosort\lib\site-packages\kilosort\gui\sorter.py", line 90, in run

clu, Wall = cluster_spikes(st, tF, ops, self.device, bfile, tic0=tic0,

File "C:\ProgramData\anaconda3\envs\kilosort\lib\site-packages\kilosort\run_kilosort.py", line 420, in cluster_spikes

clu, Wall = clustering_qr.run(ops, st, tF, mode = 'template', device=device,

File "C:\ProgramData\anaconda3\envs\kilosort\lib\site-packages\kilosort\clustering_qr.py", line 317, in run

raise ValueError(

ValueError
:
get_data_cpu never found suitable channels in clustering_qr.run.
dmin, dminx, and xcenter are: (20.0, 1.0, 19.0)

Reproduce the bug:

No response

Error message:

No response

Version information:

Kilosort 4.0, using Neuropixel 1.0 probe, python

[jacobpennington]

Please upload kilosort4.log from the results directory.

[Haorun-KUL]

Please upload kilosort4.log from the results directory.

sorry, I could not find this file in the results directory. Seems it did not be generated successfully

[Haorun-KUL]

it could not work when the mapping is like this, which I extract from OpenEphys;

so that I simplified the map like this and then I got the error

[jacobpennington]

It looks like you're using an older version of kilosort4, which is why the log did not generate. Please update to the latest version with pip install --upgrade kilosort, then try sorting again. If you still run into problems, upload kilosort4.log.

[Haorun-KUL]

now it seems working fine but still I am not sure if it is correct because half of the channels did not show any waveform

kilosort4.log
This is the log file.

this is the channel map I selected while doing recording with open ephys

[jacobpennington]

I'm not familiar with that open ephys interface. Is that showing that you only recorded from channels with the same horizontal position on the shank? Your kilosort probe preview is showing something very different.