diff --git a/notebooks/challenge/paleo/exercise_3.ipynb b/notebooks/challenge/paleo/exercise_3.ipynb index 738b84561..08f91b386 100644 --- a/notebooks/challenge/paleo/exercise_3.ipynb +++ b/notebooks/challenge/paleo/exercise_3.ipynb @@ -17,7 +17,7 @@ "
\n", "Exercise: Run a preindustrial simulation with water isotope tracers

\n", "\n", - "Download isotope-enabled CESM1.3 (iCESM1.3; [code available here](https://github.com/NCAR/iCESM1.3_iHESP_hires)) code (the version of CESM used in this tutorial does not include water isotope capabilities). \n", + "Download (`git clone`) isotope-enabled CESM1.3 (iCESM1.3; [code available here](https://github.com/NCAR/iCESM1.3_iHESP_hires)), as the version of CESM used in this tutorial does not include water isotope capabilities. \n", "\n", "Create, configure, build and run a fully coupled preindustrial case called ``b.e13.B1850.f19_g17.piControl.001`` following [CESM naming conventions](https://www.cesm.ucar.edu/models/cesm2/naming-conventions) including water isotope tracers. \n", "\n", @@ -66,8 +66,6 @@ " \n", "**# Download iCESM1.3 code** \n", "\n", - "Set environment variables with the commands:\n", - "\n", "```\n", "cd /glade/u/home/$USER/code \n", "git clone https://github.com/NCAR/iCESM1.3_iHESP_hires iCESM1.3_iHESP_hires \n", @@ -131,7 +129,7 @@ "cd $CASEDIR\n", "./xmlchange JOB_QUEUE=main\n", "```\n", - "This step can be redone at anytime in the process. \n", + "This step can be redone at anytime in the process before running `case.submit`. \n", "\n", "**# Setup**\n", "\n", @@ -168,7 +166,7 @@ "- Notice that the steps to set up this isotope-enabled preindustrial simulation are very similar to a preindustrial simulation without isotopes (e.g., Paleo Exercise 1) \n", "- In iCESM1.3, it is assumed you will run with water isotope tracers so each compset include isotope settings by default \n", "- Use ``./xmlquery`` to explore how ``FLDS_WISO``, ``CAM_CONFIG_OPTS``, and ``OCN_TRACER_MODULES`` differ between this iCESM1.3 case and that of Exercise 1 \n", - "- Also, take a look at namelist settings for each CESM component with variables contain ``wiso`` in ``$CASEDIR/Buildconf`` \n", + "- Also, take a look at namelist settings for each CESM component with variables that contain ``wiso`` in ``$CASEDIR/Buildconf`` \n", "\n", "\n", "**# Submit the run**\n", @@ -205,7 +203,7 @@ }, { "cell_type": "markdown", - "id": "65b2cbda-2d54-48ee-898b-4c391f16ca79", + "id": "06cb01fc", "metadata": {}, "source": [ "\n", @@ -325,22 +323,6 @@ "\n", "
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