README.md

NMR-Assay-Ontology

This repository is marked as archived, as the work for it has been put on hold for now.

Actions Workflows

In order to start developing an NMR-Assay-Ontology based on the draft T-box we are establish a few automated github, mainly based on ROBOT.

Robot - extract ontology terms

Extracts the terms from ontologies listed in ontologies.txt using ROBOT according to list of terms written in the ontology terms files (terms_*.txt) using the ROBOT extract action with:

• --method (TOP, BOT, STAR)

• --intermediate (all, minimal, none)

• action: .github/workflows/robot_extract.yml

• directory: .github/workflows/robot_extract.yml

• action in github

• artifact: extracted_terms.zip

  • extracted_bfo.ttl
  • extracted_chebi.ttl
  • extracted_chmo.ttl
  • extracted_iao.ttl
  • extracted_obi.ttl
  • extracted_ro.ttl
  • extracted_uo.ttl
  • merged.ttl

ontologies.txt file structure: prefix uri --method_value --intermediate_value

Example:

iao http://purl.obolibrary.org/obo/iao.owl BOT none
uo http://purl.obolibrary.org/obo/uo.owl TOP minimal