Skip to content

Latest commit

 

History

History
28 lines (14 loc) · 1.2 KB

README.md

File metadata and controls

28 lines (14 loc) · 1.2 KB

SLICE_Check

Introduction

SLICE_Check.py will check problematic slices in the diffusion images and will exclude them from the image

Protocol Parameters

  • bSubregionalCheck is a boolean with a default value of false, it will check all the subregional slices

  • subregionalCheckRelaxationFactor is a float with a default value of 1.10, it will check the relaxation factor of the subregional slices

  • checkTimes is an integer with a default value of 0, it will check the number of times the slice is problematic

  • headSkipSlicePercentage is a float with a default value of 0.10, it will skip the first 10% of the slices

  • tailSkipSlicePercentage is a float with a default value of 0.10, it will skip the last 10% of the slices

  • correlationDeviationThresholdbaseline is a float with a default value of 3.0, it will check the correlation's deviation threshold of the baseline

  • correlationDeviationThresholdgradient is a float with a default value of 3.5, it will check the correlation's deviation threshold of the gradients

  • quadFit is a boolean with a default value of True, it will check the quadratic fit of the stdev multiple between the baseline and the gradients

Examples
Author(s)