Peak finder

You can use this notebook to find peaks in your data.

Installation

To create a conda environment with Jupyter Lab and all dependencies, run:

$ conda env create -f environment.yml

Of course, you can also use this notebook in other environments as long as you have Jupyter, Jupyter Widgets, Pandas, SciPy and Matplotlib.

Run Jupyter Lab with

$ conda activate peak-finder
$ jupyter lab

and load the notebook. At the bottom of the notebook you will find this line:

find_peaks("mydatafile.csv")

Change mydatafile.csv to point at your data file and run the notebook. You should see something like this:

You can zoom into parts of your dataset and tweak the settings until you're satisfied with the detected peaks.