How to install

Install the first version

Go to the directory where you want to install Localized Reconstruction, and clone it from GitHub (first install git if not present in your system):

git clone https://github.com/OPIC-Oxford/localrec.git
cd localrec

Git will create a localrec/ directory under your current path; you do not need to create it manually.

Then add /localrec/lib in your PYTHONPATH. How to do this depends on your operating system and its configuration.

For Bash shell, add something like this to your /.bashrc file (or /.bash_profile). Here it is assumed that ~/apps is the install location:

PYTHONPATH=~/apps/localrec/lib
export PYTHONPATH

If you're using C shell, add something like this to your ~/.cshrc

setenv PYTHONPATH ~/apps/localrec/lib

Install required software

Install Scipion (release-1.1 at the moment) from https://github.com/I2PC/scipion and follow the instructions to install Relion.

Upgrade

To update the package, just download the latest version from GitHub:

git pull