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Implement NeuroML 2 version of calcium pool mechanism #2

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pgleeson opened this issue Jun 13, 2014 · 3 comments
Open

Implement NeuroML 2 version of calcium pool mechanism #2

pgleeson opened this issue Jun 13, 2014 · 3 comments
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@pgleeson
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Need to make custom NML2 implementation which behaves identically to mod file impl:
https://github.com/OpenSourceBrain/L5bPyrCellHayEtAl2011/blob/master/neuroConstruct/cellMechanisms/CaDynamics_E2_init_mod/CaDynamics_E2.mod
@pgleeson
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Can reuse custom Ca pool example from:

https://github.com/OpenSourceBrain/FarinellaEtAl_NMDAspikes/blob/master/neuroConstruct/cellMechanisms/cad2_NML2/cad2_NML2.nml

pgleeson added a commit that referenced this issue Jun 13, 2014
@pgleeson
Initial work to address #2
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@pgleeson
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pgleeson commented Jul 8, 2014

Working nml2 version of this channel is at https://github.com/OpenSourceBrain/L5bPyrCellHayEtAl2011/blob/master/neuroConstruct/cellMechanisms/CaDynamics_E2_NML2/CaDynamics_E2_NML2.nml

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pgleeson commented Jul 8, 2014

There remains the issue that the parameters decay & gamma are altered when this mechanism is placed on the soma/apical dendrites of the full L5PC cell. This is not yet correctly exported to NML2 when the cell morphology is exported.

Related to LEMS/jLEMS#32

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