From de4e5004647f1eea84b3ab93efa4f9c0a03ff79f Mon Sep 17 00:00:00 2001 From: jchiquet Date: Wed, 27 Mar 2024 17:26:12 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20PLN-team?= =?UTF-8?q?/PLNmodels@1be590214f2dbf6dca10ae12894dee0f95c0d5b8=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- apple-touch-icon-120x120.png | Bin 11489 -> 11489 bytes apple-touch-icon-152x152.png | Bin 17053 -> 17053 bytes apple-touch-icon-180x180.png | Bin 18316 -> 18316 bytes apple-touch-icon-60x60.png | Bin 4611 -> 4611 bytes apple-touch-icon-76x76.png | Bin 6063 -> 6063 bytes apple-touch-icon.png | Bin 18316 -> 18316 bytes articles/PLNPCA.html | 4 ++-- articles/PLNnetwork.html | 4 ++-- favicon-16x16.png | Bin 1259 -> 1259 bytes favicon-32x32.png | Bin 2390 -> 2390 bytes pkgdown.yml | 2 +- reference/ZIPLNnetwork.html | 2 +- 12 files changed, 6 insertions(+), 6 deletions(-) diff --git a/apple-touch-icon-120x120.png b/apple-touch-icon-120x120.png index afbc84695eb7529df827569892654fa5f427a8d1..98acf9c958ce2cb8ad5683d6a06d8ae15ba791d5 100644 GIT binary patch delta 57 zcmaDD`7m-q4Vwf*X3GirjZGW0`Hf7h3=Fgl41i>I=+m0Xjyg)nVp1Hj2PPNkfX*HH;starN4%gK69 F`2c1w6nOvu delta 59 zcmbQ+$~d=`aY7B7kg_39;PZ`5Igb2>7FNcl+6D$z1_mZJ-rFbtbyPwYb4~orJz38w F9{?pL5!?U( diff --git a/apple-touch-icon-180x180.png b/apple-touch-icon-180x180.png index 59b48f8e90f295cc69aba17603e666ca5f5634d9..6de1e5e54c50ba635f13eeccd1515c244416c057 100644 GIT binary patch delta 59 zcmeC_XYA=`oKV9i!PMTh(s*N2v>U&XiIstowt<0_fx(|sUqUCpaZ^GT>z(fNaU&ng_W_Xwt<0_fq{vQ_x8ze+?0^TToXTYPnLDh F2LK+f5vl+H diff --git a/apple-touch-icon-60x60.png b/apple-touch-icon-60x60.png index 7117660547d62695cfde65688c74ab435e6818ad..710e808b054cfdc307fecebdd1efd3de941c3abc 100644 GIT binary patch delta 57 zcmZoxX;zs~!zON}A;6oovFVZkzmc((sfD(Ift7*5r?!1;lamFNkj0vBv+bHZMKB)# D-vJRA delta 57 zcmZoxX;zs~!zLszm#mwxvFVZkzoCVdv7xqsft7*5f#UonlamFNki|CYU6+_VMKB)# D=@$_X diff --git a/apple-touch-icon-76x76.png b/apple-touch-icon-76x76.png index 0e4e74140550cebdb6d10d0636c36fd233584a71..27781acb9c6bb90576e55bb0bbdf797c021b0239 100644 GIT binary patch delta 57 zcmZ3lzg~Yr4V$=iytwU`jZJl8{6@xBrk2_U237_JAs@GHn#?b*ge<1IhL>-$gLpmw D68;d~ delta 57 zcmZ3lzg~Yr4V#d{3RZ^LjZJl8{Du}*#zxu(237_JA7__ZPUaU^LKbT{cD8l0gLpmw D@a+*$ diff --git a/apple-touch-icon.png b/apple-touch-icon.png index 59b48f8e90f295cc69aba17603e666ca5f5634d9..6de1e5e54c50ba635f13eeccd1515c244416c057 100644 GIT binary patch delta 59 zcmeC_XYA=`oKV9i!PMTh(s*N2v>U&XiIstowt<0_fx(|sUqUCpaZ^GT>z(fNaU&ng_W_Xwt<0_fq{vQ_x8ze+?0^TToXTYPnLDh F2LK+f5vl+H diff --git a/articles/PLNPCA.html b/articles/PLNPCA.html index b27e4445..14c4f250 100644 --- a/articles/PLNPCA.html +++ b/articles/PLNPCA.html @@ -259,7 +259,7 @@

Adjusting a collection of fits## Initialization... ## ## Adjusting 4 PLN models for PCA analysis. -## Rank approximation = 1 Rank approximation = 2 Rank approximation = 4 Rank approximation = 3 +## Rank approximation = 4 Rank approximation = 3 Rank approximation = 1 Rank approximation = 2 ## Post-treatments ## DONE!

Note the use of the formula object to specify the model, @@ -738,7 +738,7 @@

A model accounting for ## Initialization... ## ## Adjusting 4 PLN models for PCA analysis. -## Rank approximation = 1 Rank approximation = 2 Rank approximation = 3 Rank approximation = 4 +## Rank approximation = 3 Rank approximation = 4 Rank approximation = 2 Rank approximation = 1 ## Post-treatments ## DONE!

Again, the best model is obtained for \(q=3\) classes.

diff --git a/articles/PLNnetwork.html b/articles/PLNnetwork.html index c02ca12f..cda1a363 100644 --- a/articles/PLNnetwork.html +++ b/articles/PLNnetwork.html @@ -594,11 +594,11 @@

Structure of a PLNnetworkfit< 
 my_graph <- plot(model_StARS, plot = FALSE)
 my_graph
-
## IGRAPH cbd7d78 UNW- 17 1 -- 
+
## IGRAPH 0f1ffd9 UNW- 17 1 -- 
 ## + attr: name (v/c), label (v/c), label.cex (v/n), size (v/n),
 ## | label.color (v/c), frame.color (v/l), weight (e/n), color (e/c),
 ## | width (e/n)
-## + edge from cbd7d78 (vertex names):
+## + edge from 0f1ffd9 (vertex names):
 ## [1] Hfo--Hsp

 
 plot(model_StARS)

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#> #> Initialization... #> Adjusting 30 ZI-PLN with sparse inverse covariance estimation and single specific parameter(s) in Zero inflation component. -#> sparsifying penalty = 7.747775 sparsifying penalty = 7.156394 sparsifying penalty = 6.610153 sparsifying penalty = 6.105606 sparsifying penalty = 5.63957 sparsifying penalty = 5.209106 sparsifying penalty = 4.8115 sparsifying penalty = 4.444242 sparsifying penalty = 4.105017 sparsifying penalty = 3.791684 sparsifying penalty = 3.502268 sparsifying penalty = 3.234943 sparsifying penalty = 2.988023 sparsifying penalty = 2.75995 sparsifying penalty = 2.549285 sparsifying penalty = 2.3547 sparsifying penalty = 2.174968 sparsifying penalty = 2.008955 sparsifying penalty = 1.855613 sparsifying penalty = 1.713975 sparsifying penalty = 1.583149 sparsifying penalty = 1.462309 sparsifying penalty = 1.350692 sparsifying penalty = 1.247595 sparsifying penalty = 1.152367 sparsifying penalty = 1.064408 sparsifying penalty = 0.9831625 sparsifying penalty = 0.9081185 sparsifying penalty = 0.8388026 sparsifying penalty = 0.7747775 +#> sparsifying penalty = 7.69066 sparsifying penalty = 7.103638 sparsifying penalty = 6.561423 sparsifying penalty = 6.060596 sparsifying penalty = 5.597996 sparsifying penalty = 5.170705 sparsifying penalty = 4.77603 sparsifying penalty = 4.41148 sparsifying penalty = 4.074755 sparsifying penalty = 3.763733 sparsifying penalty = 3.47645 sparsifying penalty = 3.211096 sparsifying penalty = 2.965995 sparsifying penalty = 2.739604 sparsifying penalty = 2.530492 sparsifying penalty = 2.337342 sparsifying penalty = 2.158934 sparsifying penalty = 1.994145 sparsifying penalty = 1.841933 sparsifying penalty = 1.70134 sparsifying penalty = 1.571478 sparsifying penalty = 1.451529 sparsifying penalty = 1.340735 sparsifying penalty = 1.238398 sparsifying penalty = 1.143872 sparsifying penalty = 1.056561 sparsifying penalty = 0.9759147 sparsifying penalty = 0.901424 sparsifying penalty = 0.832619 sparsifying penalty = 0.769066 #> DONE!