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Collect matrisome proteins and analyze in the context of the organoids #9

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sgosline opened this issue Jan 14, 2021 · 1 comment
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@sgosline
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1- download matrisome genes, put them on synapse table
2- plot the expression of these genes in heatmaps across the RNA-seq data from the cNFs
3- compute the correlations for each matrisome list

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sgosline commented Jan 21, 2021

To clarify step 3 - compute sample-to-sample correlation values using the function in the loadOrganoid.R script: https://github.com/sgosline/cNFOrganoidAnalysis/blob/deconv/loadOrganoidData.R#L209

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